Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004930 |
| length | 3895 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 12 |
| gene id | XLOC_002654 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 14871136 ~ 14943281 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007179 | transforming growth factor beta receptor signaling pathway | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0060395 | SMAD protein signal transduction | biological_process |
| GO:0009880 | embryonic pattern specification | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0030509 | BMP signaling pathway | biological_process |
| GO:0009653 | anatomical structure morphogenesis | biological_process |
| GO:0060282 | positive regulation of oocyte development | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0021999 | neural plate anterior/posterior regionalization | biological_process |
| GO:0071144 | heteromeric SMAD protein complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0005515 | protein binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0031625 | ubiquitin protein ligase binding | molecular_function |
| GO:0070411 | I-SMAD binding | molecular_function |
| id | description |
|---|---|
| ko04350 | TGF-beta signaling pathway |
| ko04390 | Hippo signaling pathway |
| ko04371 | Apelin signaling pathway |
| ko04144 | Endocytosis |
| ko04110 | Cell cycle |
| ko04218 | Cellular senescence |
| ko04550 | Signaling pathways regulating pluripotency of stem cells |
| ko04659 | Th17 cell differentiation |
| ko04926 | Relaxin signaling pathway |
| ko05200 | Pathways in cancer |
| ko05205 | Proteoglycans in cancer |
| ko05210 | Colorectal cancer |
| ko05212 | Pancreatic cancer |
| ko05225 | Hepatocellular carcinoma |
| ko05226 | Gastric cancer |
| ko05166 | Human T-cell leukemia virus 1 infection |
| ko05142 | Chagas disease |
| ko05321 | Inflammatory bowel disease |
| ko05415 | Diabetic cardiomyopathy |
| ko04933 | AGE-RAGE signaling pathway in diabetic complications |
| id | description |
|---|---|
| ZDB-GENE-990603-7 | Enables DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in embryonic pattern specification and intracellular signal transduction. Acts upstream of with a positive effect on nodal signaling pathway. Acts upstream of or within negative regulation of transcription by RNA polymerase II; neural plate anterior/posterior regionalization; and positive regulation of oocyte development. Located in chromatin and nucleus. Is expressed in brain; head; immature eye; and tail bud. Human ortholog(s) of this gene implicated in Lynch syndrome; cervical cancer; and ovarian cancer. Orthologous to human SMAD2 (SMAD family member 2). |
| ensembl_id | ENSDART00000128579 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006012 | lncRNA | downstream | 1569163 | 13298839 ~ 13301973 (-) | True | XLOC_002642 |
| TCONS_00006011 | lncRNA | downstream | 2972561 | 11895373 ~ 11898575 (-) | True | XLOC_002638 |
| TCONS_00004895 | lncRNA | downstream | 3538023 | 11331969 ~ 11333113 (-) | False | XLOC_002632 |
| TCONS_00006010 | lncRNA | downstream | 4083487 | 10784334 ~ 10787649 (-) | True | XLOC_002626 |
| TCONS_00006009 | lncRNA | downstream | 4156909 | 10712178 ~ 10714227 (-) | True | XLOC_002625 |
| TCONS_00006013 | lncRNA | upstream | 101347 | 15031006 ~ 15042748 (-) | True | XLOC_002656 |
| TCONS_00006014 | lncRNA | upstream | 103313 | 15032972 ~ 15034960 (-) | True | XLOC_002657 |
| TCONS_00004942 | lncRNA | upstream | 152751 | 15082410 ~ 15084047 (-) | False | XLOC_002660 |
| TCONS_00004943 | lncRNA | upstream | 152751 | 15082410 ~ 15086297 (-) | False | XLOC_002660 |
| TCONS_00005751 | lncRNA | upstream | 153935 | 15083594 ~ 15083896 (-) | True | XLOC_002660 |
| TCONS_00004927 | mRNA | downstream | 314158 | 14547941 ~ 14556978 (-) | True | XLOC_002652 |
| TCONS_00004926 | mRNA | downstream | 325478 | 14542726 ~ 14545658 (-) | True | XLOC_002651 |
| TCONS_00004925 | mRNA | downstream | 330693 | 14529807 ~ 14540443 (-) | True | XLOC_002650 |
| TCONS_00004924 | mRNA | downstream | 334737 | 14525184 ~ 14536399 (-) | False | XLOC_002650 |
| TCONS_00004921 | mRNA | downstream | 382618 | 14263684 ~ 14488518 (-) | False | XLOC_002649 |
| TCONS_00004936 | mRNA | upstream | 6386 | 14936045 ~ 14938235 (-) | False | XLOC_002655 |
| TCONS_00004938 | mRNA | upstream | 117178 | 15046837 ~ 15048781 (-) | False | XLOC_002658 |
| TCONS_00004939 | mRNA | upstream | 118250 | 15047909 ~ 15048781 (-) | True | XLOC_002658 |
| TCONS_00004940 | mRNA | upstream | 120810 | 15050469 ~ 15053614 (-) | False | XLOC_002659 |
| TCONS_00004941 | mRNA | upstream | 123039 | 15052698 ~ 15053507 (-) | True | XLOC_002659 |
| TCONS_00004928 | other | downstream | 138737 | 14732283 ~ 14732399 (-) | True | XLOC_002653 |
| TCONS_00004922 | other | downstream | 382982 | 14326826 ~ 14488154 (-) | False | XLOC_002649 |
| TCONS_00004920 | other | downstream | 939440 | 13931569 ~ 13931696 (-) | True | XLOC_002648 |
| TCONS_00004919 | other | downstream | 1258888 | 13612133 ~ 13612248 (-) | True | XLOC_002647 |
| TCONS_00004918 | other | downstream | 1263993 | 13607027 ~ 13607143 (-) | True | XLOC_002646 |
| TCONS_00004937 | other | upstream | 8168 | 14937827 ~ 14940346 (-) | True | XLOC_002655 |
| TCONS_00004948 | other | upstream | 407651 | 15337310 ~ 15340332 (-) | False | XLOC_002662 |
| TCONS_00004954 | other | upstream | 688557 | 15618216 ~ 15619015 (-) | False | XLOC_002664 |
| TCONS_00004975 | other | upstream | 2147774 | 17077433 ~ 17083377 (-) | False | XLOC_002675 |
| TCONS_00004978 | other | upstream | 2174639 | 17104298 ~ 17132910 (-) | True | XLOC_002678 |
