RNA id: TU2081760


Basic Information

Item Value
RNA id TU2081760
length 2043
RNA type TUCP
GC content 0.49
exon number 3
gene id G1819250
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 50301801 ~ 50305038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgtctgtgttgtccatgtggtcgggtctgtctgtgttgtctatgtggtcgggtctgtctgtgttgtctatgtggtcgggtctgtctgtgttgtctatgtggttgggtctgtctgtgttgtctatgtggtcgggtctgtctgtgttgtctatgtggttgggtctgtctgtgttgtctatgtggttgggtctgtctgtgttgtctatgtggtcgggtctgtctgtgttgtccatgtgGTTGGGTCTTTCTGTGTTGTCCATGTGGTCGGGTCTGTCTGTATTGTCCATGTGGTTGAGTCCGTCTGTATTGTCCATGTGGtcgggtctgtctgtgttgtactCTAGCAGACAGGGTCAGGGAATGTTGTAGGTTTAGAGTTAGACTGGCACAGTACAGTATCTTCATCCTCGGCCCATAATGTTTTCATAGTCAGCTGTACTTGAGAAGAGAAGgtaagggacagagagaagagaaggtaggggacagagagaagagaaggtaagggacagagagaagagaaggtaaggggacagagagaagagaaggtaggggacagagagaagagaaggtaagggacagagagaagagaaggtaggggacagagagaagagaaggtaagggacagagagaagagaaggtaaggggacagagaaaagagaaggtaagggacagagaggagagagaggacagggctgGAGACAGTCTGCTCTGAGGACAGGACTGGAGACAGTCTGCTCTGAGGACAGGACTGGAGACAGTCTGCTCTGAGGACAGGACTGGAGACAGTCTGCTCTGAAGACAGGGCTGGAGATAGTCTGCTCTGAGGACAGGACTGGAGACAGTCTGCTCTGAGGACAGGACTTTAAACAGTCTGCTCTGAGGACAGGACTGGAGCAGGCCGCGTTCTCATCATTAAATCATAGAGCAGTAAGCCAACGCTGGACACAGCTGTCTTACTGAGGTGTCTGCTGTCTGGGCTGAGGGCTGTGCTGGGCTTGGATGCTCTGGGAGAAATGTTAAAGCAGGCATGATGTGTTGCAGAGTGGCATTAGTTAAATAAAgcccctggtctgaagtagtgcactgtgtagggaatagggtggctcTGGGGACGCATCCATTGTCATCTTGTTCAGGGACCTAGAGAGGGAGGTAAGTCGTCCAGAGGCTCTGGTGTCCTCTATCTGAACCTCTTCACAGTCTGTACCCAACCGTCAGGAGCTGCTGCTAGCTGGCACAGGACAGGATGGTCCTCTTGGGACGTTTCccactcctctactccctgtCCGTCACCAAGCGTCCGTGGTGATGATGCCGGGGTTCAGAGTGAGGACAATCAAACACACCGTCCGCTCCTCTTCCCTCGTCCGCTCCTTTTCCCTcgtcccctcctcttcccttcctgaTACACATTTAACTGTCAGAGTCCCTCTCTCTCCGGTCCTTGGTACAGATCTGAAAGTGTCATTTCATGGTGCAAATTAGGGCTGGGAATCACCAGGGAACTCACGATACGATAattatcatgatacttaggtgccgatacgaaaTGTATTGCTATTCTCACGATTCTGTATGTATTGCTATTCTCActattctcacgattctatatatTTTGTGATTCGATACTTGATTGTGATTTGAAGTTGTatacatattgctcactatatgttAGTTAGATtggatcagtcatggaaataaaagtgctgaaaatactgtatgttggctcactatttaaaaagaaagAGAACAAGCTAGTACAGCCGACAAGAGCTAGCTAACACTACCTAGCTCTAGCTAACACTACCTAGCTCTAGCTAACACGACCTAGCTCTAGCTAACACTACCTAGCTCTAGCTAACACTACCTAGCTCTAGCTAACACGACCTAGCTCTAGCTAACACGACCTAGCTCTAGCTAACACTACCTAGCTCTAGCTAACACTACCTAGCTCTAGCTAACACTACCTAGCTCTAGCTAACACGACCTAGCTCTAGCTAACACTACCTAGCTCTAGCTAACACTACCTAGCTCTAGCTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2081641 lncRNA downstream 82568 50160777 ~ 50219233 (-) False G1819189
TU2081612 lncRNA downstream 132540 50137937 ~ 50169261 (-) False G1819189
TU2081588 lncRNA downstream 191830 50109770 ~ 50109971 (-) True G1819185
TU2081534 lncRNA downstream 298502 50002783 ~ 50003299 (-) True G1819148
TU2081507 lncRNA downstream 349263 49951604 ~ 49952538 (-) True G1819125
TU2081762 lncRNA upstream 4223 50309261 ~ 50309620 (-) True G1819252
TU2081765 lncRNA upstream 21995 50327033 ~ 50327721 (-) True G1819255
TU2081790 lncRNA upstream 70056 50375094 ~ 50378743 (-) False G1819266
TU2081786 lncRNA upstream 70968 50376006 ~ 50379569 (-) True G1819266
TU2081798 lncRNA upstream 83269 50388307 ~ 50388550 (-) True G1819274
XM_036959481.1 mRNA downstream 57856 50122888 ~ 50243945 (-) True prkag3b
XM_036959479.1 mRNA downstream 57857 50122888 ~ 50243944 (-) False prkag3b
XM_036959480.1 mRNA downstream 57857 50122888 ~ 50243944 (-) False prkag3b
XR_005038852.1 mRNA downstream 57859 50122888 ~ 50243942 (-) False prkag3b
XM_036959089.1 mRNA downstream 820841 49470102 ~ 49480960 (-) True LOC118943599
XR_005038856.1 mRNA upstream 155056 50460094 ~ 50465680 (-) False si:ch211-67e16.4
XM_036959488.1 mRNA upstream 155259 50460297 ~ 50465680 (-) False si:ch211-67e16.4
XR_005038853.1 mRNA upstream 155259 50460297 ~ 50465680 (-) False si:ch211-67e16.4
XR_005038854.1 mRNA upstream 155259 50460297 ~ 50465680 (-) False si:ch211-67e16.4
XR_005038855.1 mRNA upstream 155259 50460297 ~ 50465680 (-) False si:ch211-67e16.4
TU2081603 other downstream 87915 50209474 ~ 50213886 (-) True G1819189
TU2081122 other downstream 582423 49717632 ~ 49719378 (-) True G1818802
TU2080662 other downstream 1135434 49165751 ~ 49166367 (-) True G1818417
TU2080631 other downstream 1175684 49125514 ~ 49126117 (-) True G1818393
TU2080196 other downstream 1673955 48627364 ~ 48627846 (-) True G1818059
TU2082589 other upstream 157847 50462885 ~ 50463762 (-) True si:ch211-67e16.4
TU2082615 other upstream 190146 50495184 ~ 50496991 (-) False cd28
TU2082808 other upstream 591534 50896572 ~ 50897153 (-) True G1820012
TU2082854 other upstream 718400 51023438 ~ 51026181 (-) True G1820053
TU2082908 other upstream 777951 51082989 ~ 51085809 (-) True carf

Expression Profile