RNA id: TU2085323


Basic Information

Item Value
RNA id TU2085323
length 1394
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC110517589
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 1352981 ~ 1486612 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGATTGAATCCAGGCCTTAGGGATCTATGTTATATGTATCGCTGAAGCATTACAGATCACATTGATAGAACATTTTAAAGGTAACCTCTGATTGAGGGGACATGTGAAGCGTTTACAGTGAAATGAGCTAACGCAGAAACATTGAAGGTAAATTTCAATTGGGTTGGGTAACAATGAACTTCACGATACTTAATTGAATAGACTCCttattgaatctaggccttagtATCAATCCTCTGTCTATTTGTCTCCTTTTTTTTTAGGTCAAATCATTTAGATGGAATCACCCTGGAACAATGTAATGTTTTAGCcttaggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGttttagggagagagaggaggaccagATCATTTGTACATTAATGTAGTGTTTTAGCcttgggggagagaggagagaggaccagaTCATTTGTACATTAATGTAATGTTTTAGCcttgggggagagaggagatgggaccAGATCATTTGTACATTAATGTAATGttttagggagagagaggagagaggaccagaTCATTTGTACATTAATGTAATGttttagggagagagaggagagaggaccagaTCATTTGTACATTAATGTAGTCTTGTCCGTCTCGAGGATCCACCACTCGACAGACAGACAAGTAGGTCTGACGTGAAAGGAGTTGATTTCCTATCCTGACATTTCATTCTGTCCCCAGCAGTACAAAAAATTAGGATCAAGGCCTCTtggactttttgttgttgttgttgttgttgttgttgttgttgatagacATTCAAGTGAACTCACAAATGCCTTGTCCTCTATGAACATACCATTAGCTACGTATCAACTGGATCTCATCGGTGTGCGTCTCCAACTCCATCAAGTGAACTCACAAATGCCTTGTCCTCTATGAACATACCATTAGCTACGTATCAACTGGATCTCATCGCTGTGTCTCCAACTCCATCAAGTGAACTCACAAATGCCTTGTCCTCTATGAACATACCATTAGCTACGTATCAACTGGATCTCATCGCTGTGCGTCTCCAACTCCATCAAGTGAACTCACAAATGCCTTGTCCTCTATGAACATACCATTAGCTACGTATCAACTGGATCTCATCGGTGTGCGTCTCCAACTCCATCAAGTGAACTTATGTTCGTCATTGACTGCCATTCCCAGGAAGCACTGCTAGAGATGATGTATTCTCATGATTAAGTCAtgattaaggcagtttatacattttttttaacattacAATAGATTCATAACAGATTTCTCAACACACTAAGTGTTATGCAGTACTTACCATGAATAGCGTCTCCGTGAACGCGGGAACATAGCGCAGGTCTTAAGCACtacggattgaatcgagccccA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2085151 lncRNA downstream 1520 1348957 ~ 1351555 (-) True G1821725
TU2085144 lncRNA downstream 33504 1319283 ~ 1319571 (-) True G1821719
TU2085142 lncRNA downstream 38905 1313940 ~ 1314170 (-) True G1821717
TU2085141 lncRNA downstream 40322 1312529 ~ 1312753 (-) True G1821716
TU2085140 lncRNA downstream 41802 1311042 ~ 1311273 (-) True G1821715
TU2085381 lncRNA upstream 135194 1489961 ~ 1490893 (-) True G1821912
TU2085395 lncRNA upstream 147486 1502253 ~ 1502714 (-) True G1821922
TU2085397 lncRNA upstream 155042 1509809 ~ 1513000 (-) True G1821924
TU2085402 lncRNA upstream 159139 1513906 ~ 1515187 (-) True G1821925
TU2085371 lncRNA upstream 160595 1515362 ~ 1515899 (-) True G1821906
XM_036960821.1 mRNA downstream 8343 1305547 ~ 1344732 (-) False LOC110515341
XM_036960822.1 mRNA downstream 8343 1305547 ~ 1344732 (-) True LOC110515341
XM_036960832.1 mRNA downstream 460498 844436 ~ 892577 (-) True LOC118943914
XM_036960021.1 mRNA upstream 162740 1517507 ~ 1557129 (-) False LOC110515109
XM_036960022.1 mRNA upstream 162740 1517507 ~ 1557129 (-) False LOC110515109
XM_036960023.1 mRNA upstream 166332 1521099 ~ 1557129 (-) True LOC110515109
XM_036959701.1 mRNA upstream 517934 1872701 ~ 1912670 (-) False LOC110516366
XR_005039101.1 mRNA upstream 517934 1872701 ~ 1912670 (-) False LOC110516366
TU2085083 other downstream 120808 1231836 ~ 1232267 (-) True G1821682
TU2083978 other downstream 1329591 22558 ~ 23484 (-) True G1820880
TU2083976 other downstream 1332833 19768 ~ 20242 (-) True G1820878
TU2085328 other upstream 44848 1399615 ~ 1450022 (-) True LOC110517589
TU2085396 other upstream 148184 1502951 ~ 1513441 (-) True G1821923
TU2085536 other upstream 409380 1764147 ~ 1765537 (-) False G1822025
TU2085615 other upstream 533441 1888208 ~ 1891148 (-) False G1822081
TU2085612 other upstream 534564 1889331 ~ 1891148 (-) False G1822081

Expression Profile