RNA id: XM_036960023.1



Basic Information


Item Value
RNA id XM_036960023.1
length 1340
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC110515109
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 1517507 ~ 1557129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGTGTAGTTGGCTCATTTTTAGTTCCGCCCTGGTCTGAAGGGACAGCTGGGTTAATAACGCAATGTATCTCTCTTTGAGAAACGTCCTGCGATTTAACTGCAACCTCCAGGCGTTGCAGAGGAGCCGTTCCAACACAAAGCACAGTCCTGCAGTCATCTCCTCCAGAATGTCTTCAGAGTACAGAATTGAGGCAGACACCTTCGGAGAGCTGAAGGTGCCCGTTGACAAGTATTATGGGGCTCAGACAGTCAGATCCACCATGAACTTCAAGATCGGAGGACCGTCGGAGAGAATGCCAATCCAGGTGATCAAAGCCTTTGGGATTCTGAAGAGGGCTGCTGCAGAGGTCAACAAGGACTACGGACTGGACCCGAGGCTGGCTGATGCCATCGTGCAGGCTGCTGATGAGGTGGCAGCTGGTAAGCTGGATGACCATTTTCCTCTGGTGGTGTGGCAGACCGGGTCAGGAACTCAGTCCAACATGAACGTCAACGAGGTGATCAGCAACAGGGCCATCGAGATCCTCGGAGGGAAGCTGGGGAGCAAGGACCCTGTTCACCCCAACGACCACGTCAACAAAAGCCAGAGCTCCAACGATACGTTCCCCACAGCCATGCACATCGCAGCAGCCAAAGAGGTCCACGAGGTTCTGCTGCCCGGTCTACAACACCTCCACGACGCCCTGCACGCCAAGGCTGTGGAGTTTAAAGACATCATCAAGatcggacgcacacacacacaggacgctgtgccgttgtctctgggacagGAGTTCGGTGGGTATGTGCAGCAGGTAAAGTACAGTATAGAGCGAGTGAAGACGGCCATGCCCAGAATATATGAGCTGGCAGCAGGAGGTACTGCCGTGGGCACGGGCCTCAACACGCGCATCGGCTTCGCTGAGAAAGTAGCAGCTACTGTCGCCTCTCTCACAGGTCTGCCTTTCGTGACTGCTCCCAACAAATTTGAGGCTCTGGCGGCCCACGATGCTCTGGTGGAGCTGAGCGGCGCGTTGAACACGGTGGCCGTCAGTATGATGAAGATCGCCAATGATATCCGCTTCCTGGGGTCCGGGCCCCGCTCTGGCCTGGGAGAACTCTGTCTGCCTGAGAACGAGcctggtagcagcatcatgcctGGGAAAGTTAACCCCACCCAGTGTGAGGCCATGACCATGGTAGCAGCCCAGGTTATGGGAAACAACGTGGCTGTGACCATCGGAGGCAGCAACGGACACTTTGAGCTTAACGTCTTCAAGCCAATGATGattaAGAACGTGTTGAACTCAGCCAGGCTGCTGGGGGAtgcctcagtcataatgtaactcctcctctctcct

Function


GO: NA

KEGG:

id description
K01679 E4.2.1.2B, fumC, FH; fumarate hydratase, class II

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2085371 lncRNA downstream 5200 1515362 ~ 1515899 (-) True G1821906
TU2085402 lncRNA downstream 5912 1513906 ~ 1515187 (-) True G1821925
TU2085397 lncRNA downstream 8099 1509809 ~ 1513000 (-) True G1821924
TU2085395 lncRNA downstream 18385 1502253 ~ 1502714 (-) True G1821922
TU2085381 lncRNA downstream 30206 1489961 ~ 1490893 (-) True G1821912
TU2085415 lncRNA upstream 9879 1567008 ~ 1567391 (-) True G1821938
TU2085416 lncRNA upstream 10743 1567872 ~ 1568322 (-) True G1821939
TU2085418 lncRNA upstream 18424 1575553 ~ 1575948 (-) True G1821940
TU2085423 lncRNA upstream 23210 1580339 ~ 1581054 (-) True G1821943
TU2085428 lncRNA upstream 32087 1589216 ~ 1589496 (-) True G1821948
XM_036960121.1 mRNA downstream 34487 1352981 ~ 1486612 (-) False LOC110517589
XM_036960122.1 mRNA downstream 34487 1352981 ~ 1486612 (-) False LOC110517589
XM_036960123.1 mRNA downstream 34487 1352981 ~ 1486612 (-) False LOC110517589
XR_005039161.1 mRNA downstream 34487 1352981 ~ 1486612 (-) False LOC110517589
XM_036960822.1 mRNA downstream 176367 1305547 ~ 1344732 (-) True LOC110515341
XM_036959701.1 mRNA upstream 315572 1872701 ~ 1912670 (-) False LOC110516366
XR_005039101.1 mRNA upstream 315572 1872701 ~ 1912670 (-) False LOC110516366
XR_005039102.1 mRNA upstream 315572 1872701 ~ 1912670 (-) True LOC110516366
XR_005039103.1 mRNA upstream 339154 1896283 ~ 1896581 (-) True LOC118943822
XR_005039152.1 mRNA upstream 692023 2249152 ~ 2249800 (-) False LOC118943847
TU2085396 other downstream 7658 1502951 ~ 1513441 (-) True G1821923
TU2085328 other downstream 71077 1399615 ~ 1450022 (-) True LOC110517589
TU2085083 other downstream 288832 1231836 ~ 1232267 (-) True G1821682
TU2083978 other downstream 1497615 22558 ~ 23484 (-) True G1820880
TU2083976 other downstream 1500857 19768 ~ 20242 (-) True G1820878
TU2085536 other upstream 207018 1764147 ~ 1765537 (-) False G1822025
TU2085615 other upstream 331079 1888208 ~ 1891148 (-) False G1822081
TU2085612 other upstream 332202 1889331 ~ 1891148 (-) False G1822081
TU2085613 other upstream 332202 1889331 ~ 1891148 (-) False G1822081
TU2085618 other upstream 332202 1889331 ~ 1890006 (-) False G1822081

Expression Profile