RNA id: XM_036959701.1


Basic Information

Item Value
RNA id XM_036959701.1
length 2091
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110516366
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 1872701 ~ 1912670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCTCAGGTCGCCTGGTGTGGAGCTCCTTCCTGCTTGCGGAGCACAGACAGAAGAGAGGTGAAGGAGTTGGACCCGAAGAGGAGTTGGACCCAAAGGAGAGTTGGATCCAAAGGAGTTGGACCCGAAGAGCAGTTGGATCCAAAGGAGTTGGACCCAAAGGAGAGTTGAACCCAAAGGAGAGTTGAACCCAAAGAGGAGTTGGGCAAGctttaataaaacataatttaaacataGCTGGCTAAATCGCTTTTAACTTAGATTTGTGAAACAACACGTTTTTTTTTTCCAAAGTTCACGGACATGTTTGAGAAGATCGCTTGTAGTTATTAACTTGTTACCGGCGTTTACTGTCTACCATCACCACCCGGTGTACCCGTTACCCCTCCAGCCCCTGggccctgtctctctatctcttctgcCTCTCAGCTAACCTCGATCTGGGAAAGATGGTGTCGTGGATGATCTCCAGAAGCGTTGTGCTCGTCTTCGGGACCCTGTATCCTGCATACTATTCCTACAAAGCAGTGAAAACCAAAAATGTCAAGGAATATGTCCGTTGGATGATGTACTGGATTGTGTTTGCTCTCTACACCGTAGTGGAGACCATCACAGACCTCACTGTAGCCTGgttccCCCTGTACTATGAGATTAAGATAGCATTTGTTATCTGGTTGCTGTCTCCCTACACCAGAGGAGCTAGTCTCATCTACAGGAAGTGCCTCCATCCTCTACTGTCCTCaagagagaggGAGATAGACGAGTACATTGTCCAGGCCAAGGAGCGTAGCTACGAGACCATGGTGACCTTCGGCAAGCAGGGCCTAAGTATAGCTGCTACTGCAGCTGTCTCCGCAGCTGTCAAGggccaGGGGGCGATCACAGAGAAGCTGAGGAGCTTCAGTATGCACGACCTGACTCAGATACCCCTCGACGACGCAGCAGCCAATCAGATCTATACGGCCCATGCCGGCAACCCTGCCGTGAGCAGGAGGGCGCTCGCCGCAAACTCGACCGACAGAacagAGTACTATGCCTATGAtcaggaggacaggacagacgAGGAGGGGGAACAACTTTTCTCAGAGGACGAGGCTGTCACCCAGAGAGGTCTGAGGAGGTCCCAGAGTGTCAAGATCGTGCGCTCTAAAGCTCGCAAAGATGCCCGTTATGGATCTCTGAAGATCAAAGGAAAGCGGAGGCCGGTTCTGACTGCTGCTACCTACAGTGCCATGTAATGAACAGTCTAGGAGACGTGACTGCTGGCTGGTGCCATGGATGGGTTTCCTTCTgtagtgctctactgttgaccagagcatGGTGGGTCCTGgctaaaagtagtgcattatgggccctggccaacagtagtgcattatgggccctggccaacagtagtgcattatgggccctggCCAACAGTAGTGCACGAGAATGGGAATAGGCTTTTTGGGACGGACCAGGAAATCAGTCAACAATTCAGGAAGGACTACTGACGGCTCCAACATCCATATCAGTGACTACTGACGGCTCCAACATCCATATCAGTGACTACTGACGGCTCCAACATCCATATCAGTGACTACTGACGGCTCCAACATCCATATCAGTGACTACTGACATGTTAGACCATCCATTCTATGGAGAACGATGCTGTGGAACTGTTCTCCtggtgttttttttaaactgtccTGGGGTCTAATTCTATTCACGCTGGGAGCATCTGTCTCTTTTTAAATGAACCACCAACTCACTATATTTATGACATTATTCTGACTGTGTGTATTTAAACCATCGTACAGCGGTAGCTGTACAGAAAGAATCTTAAGGTTTCCTGCCTTTTAGTTAAGTGTTGTTGTTGCATGGATCTTATATTCTGGGTTGTTTTTATGTGAGGATGTGGACTTTTTAGGatcttgtcttttttttttgAGGGGTTATATAATTCATTTAGCTTCATTTTGTCATATATGCTGCCTTGTATTTTGAGTTTAGCTGATTTTAAATAGTAGAATACATTATAATAGTGATCATTCTGGCACTTAAAAAGATTGTTACCAAGTAACAGCTGACCAAAAAGTGTCCCTTATTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2085574 lncRNA downstream 4300 1868145 ~ 1868401 (-) True G1822060
TU2085572 lncRNA downstream 5469 1867010 ~ 1867232 (-) True G1822058
TU2085559 lncRNA downstream 85352 1786966 ~ 1787349 (-) True G1822045
TU2085553 lncRNA downstream 92336 1780049 ~ 1780365 (-) True G1822039
TU2085535 lncRNA downstream 106063 1764147 ~ 1766638 (-) False G1822025
TU2085638 lncRNA upstream 2267 1914937 ~ 1923478 (-) True G1822098
TU2085649 lncRNA upstream 19143 1931813 ~ 1932027 (-) True G1822109
TU2085650 lncRNA upstream 20334 1933004 ~ 1933211 (-) True G1822110
TU2085818 lncRNA upstream 27709 1940379 ~ 1940876 (-) True G1822229
TU2085855 lncRNA upstream 113291 2025961 ~ 2026514 (-) False G1822265
XM_036960021.1 mRNA downstream 315572 1517507 ~ 1557129 (-) False LOC110515109
XM_036960022.1 mRNA downstream 315572 1517507 ~ 1557129 (-) False LOC110515109
XM_036960023.1 mRNA downstream 315572 1521099 ~ 1557129 (-) True LOC110515109
XM_036960121.1 mRNA downstream 386089 1352981 ~ 1486612 (-) False LOC110517589
XM_036960122.1 mRNA downstream 386089 1352981 ~ 1486612 (-) False LOC110517589
XR_005039152.1 mRNA upstream 336482 2249152 ~ 2249800 (-) False LOC118943847
XM_036960034.1 mRNA upstream 337846 2250516 ~ 2255438 (-) False LOC110511972
XM_036960033.1 mRNA upstream 337846 2250516 ~ 2255447 (-) True LOC110511972
XM_021596423.2 mRNA upstream 410294 2322964 ~ 2324578 (-) True LOC110519246
XM_036960207.1 mRNA upstream 475351 2388021 ~ 2493351 (-) True LOC118943863
TU2085536 other downstream 107164 1764147 ~ 1765537 (-) False G1822025
TU2085396 other downstream 359260 1502951 ~ 1513441 (-) True G1821923
TU2085328 other downstream 422679 1399615 ~ 1450022 (-) True LOC110517589
TU2085083 other downstream 640434 1231836 ~ 1232267 (-) True G1821682
TU2083978 other downstream 1849217 22558 ~ 23484 (-) True G1820880
TU2085917 other upstream 218642 2131312 ~ 2132511 (-) True G1822308
TU2085950 other upstream 287915 2200585 ~ 2250217 (-) True G1822333
TU2087107 other upstream 592897 2505567 ~ 2506443 (-) False G1823141
TU2087084 other upstream 600648 2513318 ~ 2516923 (-) True LOC118943899
TU2087372 other upstream 1370463 3283133 ~ 3324789 (-) True LOC118943857

Expression Profile