RNA id: XM_021596423.2


Basic Information

Item Value
RNA id XM_021596423.2
length 1615
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC110519246
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 2322964 ~ 2324578 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGCTCGCTGTCACTGCGGACGTGACGATCAGATAGGCTTGGAAATGATTCTGGACCGTGAATATTCTCTGGAGATAAAACCATATTTATTTACCATGAAAAACgttacagtataactttagacgcGCATTTATTTCGTTTGAACGCGGTCCCATCCTGGAGTGACGATATTGTGCGAGATTCGAGGAGAAAAGAGCGTTTCCAACTCGGTCCGTTTCTgctgcctgtagctcagctgCGTCTGAAGAAAACAAGCATCGATAAGCGTCGGATTTGTCTCCACATGAAAAATGCCACGGGATAACAAGAAGTCTCTCATTCAGAAAATAGCCAGCCAAGCCAATATCACATTTAAAGATTTCAATGCATCCGCAATTGGGGACAACAAAGTATTATTGGACAACCGGGGGGATCTAATCACCCTGCTGACGGAAGTCAGGACTGCAGACCTGAAGATGAAACCGAACGGCTCCCATTCCGAACACAACCCACCTGTCACGTACATGCACATCTGCGAGACGGAGTCGTTCAGTATGGGGGTGTTTCTACTGAACAGCGGGGCTTCCATCCCGCTCCACGACCACCCCGGTATGAACGGGATGCTCAAGGTTCTATACGGGAAAGTCAGTATCAGGTGTTTTGACCTGTTGGATAAACCTTCGGACCAGGTGCAGAGTGAGACCCAGTTCGACCCGCCGCTGCTGCCGTTCCAGAAGGACTCTCTGCGGCGGGCTGTGCTCCGGTCAACCATGTGGTTCACCCATGACAGTAGTCCGTGTATCTTAACCCCACAGAGGGAGAACCTGCATCAGATCGACACGGTGGATGGACCGGCTGCTTTCCTCGACATCCTGGCACCTCCGTATGACCCTGAAGATGGGAGGGACTGTCATTATTATAAAGTCCTACAGACTGTTCCCGACGCAGACAGTAAGGTAGAGGCGCAGCAGCCGTGGGAGGAAGAGACGTGGTTACTAGAGATAGGCCAGCCTGATGGCTTCTGGTGTGGGGGTGAACCATACCCCGGGCCCAAGGTTTCCTTCTAATGTCGGTGTTGTAAAGGCAGGGATACCTGCGACCAAATAGGGGCTGCCGGAGGACTTTCAAAAGACTGAATCACTGTGACTGGGACATGAGTTGTAGCAGGTGAATGAACTGCAGGTGGATAATGTCTCTGGGACAGGCCTTTTGTTTAAGTATTGAACCTTCTCCTGTAAACTTCCAAATAAGATGTTTTCATCCTGAACAGGCTCAGAAACGTCCTATTCTCTTAACAACATTTGTTTGTAACTGAAAATGTGATATGCCTTATGTGAATATTGAATGTAAACTTTGAAAGCATTTATCATGTCTAGTTTCCATGTGCACACTACATTTTCTATCTTTCATTGATTTATTCCAaacaaatgtgtgtatgtgtaaacaCTAGCTTTGTTTATAATTGAAGGCTTTTATTTTGGGACAGCTGAAAGTTCTACCTATAGCCTtactgcatatacagtgccttcggaaagtattcagaccccttgacttttttcacattttgttacataacagctttattctaaaatatattaaattgtttttcctcatcaatctacactaccccataa

Function

GO: NA

KEGG:

id description
K23953 PCO; plant cysteine oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2086038 lncRNA downstream 1289 2321407 ~ 2321675 (-) True G1822390
TU2086006 lncRNA downstream 23734 2298222 ~ 2299230 (-) True G1822375
TU2085991 lncRNA downstream 43370 2279042 ~ 2279594 (-) True G1822369
TU2085975 lncRNA downstream 62256 2260458 ~ 2260708 (-) True G1822357
TU2085946 lncRNA downstream 73506 2246705 ~ 2249458 (-) True LOC118943847
TU2086041 lncRNA upstream 2390 2326968 ~ 2328460 (-) True G1822393
TU2086063 lncRNA upstream 38437 2363015 ~ 2363711 (-) True G1822409
TU2086072 lncRNA upstream 45286 2369864 ~ 2370289 (-) True G1822414
TU2086152 lncRNA upstream 61221 2385799 ~ 2386495 (-) False G1822471
TU2086153 lncRNA upstream 61221 2385799 ~ 2386495 (-) True G1822471
XM_036960033.1 mRNA downstream 67517 2250516 ~ 2255447 (-) True LOC110511972
XM_036960034.1 mRNA downstream 67526 2250516 ~ 2255438 (-) False LOC110511972
XR_005039152.1 mRNA downstream 73164 2249152 ~ 2249800 (-) False LOC118943847
XM_036959701.1 mRNA downstream 410294 1872701 ~ 1912670 (-) False LOC110516366
XM_036960207.1 mRNA upstream 63443 2388021 ~ 2493351 (-) True LOC118943863
XM_036960761.1 mRNA upstream 189401 2513979 ~ 2528205 (-) False LOC118943899
XM_036960756.1 mRNA upstream 189401 2513979 ~ 2528690 (-) False LOC118943899
XM_036960760.1 mRNA upstream 189401 2513979 ~ 2528690 (-) False LOC118943899
XM_036960757.1 mRNA upstream 189401 2513979 ~ 2528846 (-) False LOC118943899
TU2085950 other downstream 72747 2200585 ~ 2250217 (-) True G1822333
TU2085917 other downstream 190453 2131312 ~ 2132511 (-) True G1822308
TU2085612 other downstream 431816 1889331 ~ 1891148 (-) False G1822081
TU2087107 other upstream 180989 2505567 ~ 2506443 (-) False G1823141
TU2087084 other upstream 188740 2513318 ~ 2516923 (-) True LOC118943899
TU2087372 other upstream 958555 3283133 ~ 3324789 (-) True LOC118943857
TU2087596 other upstream 1180999 3505577 ~ 3506272 (-) True G1823530
TU2087616 other upstream 1230435 3555013 ~ 3557825 (-) False LOC118943921

Expression Profile