RNA id: TCONS_00052476


Basic Information

Item Value
RNA id TCONS_00052476
length 820
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_026580
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34641048 ~ 34641973 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTCCAAAGAAACATCAGTCACATAAAACAACATGCTTGCTGTAAACACTTCATCTGAaggcgtgtatgtgtgtgtgtgtgtgtgtgtgtgttagtgggaGGGACAGTGGAGGTCCGTCCTGCCCCCAGTCCTGCCCGCAGATGGCTTCAATTCAGCAAAAGATGGTGGGTGGACGGGCTCAATGGAGGCTCAGAAGACTTTGACCATGGCCCCATAAATAGCGGAGGTCCCATTTACAGCTCACCtgcaacacacacgcacacacacactcagacataaTGAGCGATAATTGTAGCATAGCCTCAGGCAGCAGGGCTTTGGCTCAGGATGGATGGCAACTCTAGTTTAGATTGCAGAAGATTGTATTCCAGAAATCCCATTCAAGTACTCTGAGACTGCAAGTTAGTGTTAAGTTTTGAAGCAGCCTCACTCAAAACAAATCAACTGACAGCGGCATGGTgcctttataaataatgtaatgctGGAAATGCTGTCTTCATATATTGGCTGAATCATTTACTTCAGGTTGTCTGGCAGGTTGTTTGATATGTCTATGCCATGCATGTTTAGGCTCGCTGACACCTAGCATGAAAACTATAACAGCTATAAAGGTTTAATAATCTTTCTAATTCTAAATCTAATTCTAAAGACACAGCACTATAACATAtagccagtggtgtaaagtaactaattacaaatactcaaattactgtaaatgagtagtttttctcaggaattgtagttaactaagtagttttataaatgtatacttttacttttgcttgagtacattttaagtgctgtatctgtactttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051776 lncRNA downstream 47992 34591917 ~ 34593056 (-) True XLOC_026576
TCONS_00051773 lncRNA downstream 94642 34525942 ~ 34546406 (-) False XLOC_026575
TCONS_00051771 lncRNA downstream 163685 34470154 ~ 34477363 (-) False XLOC_026575
TCONS_00051763 lncRNA downstream 460597 34179807 ~ 34180451 (-) True XLOC_026573
TCONS_00051762 lncRNA downstream 460616 34179807 ~ 34180432 (-) False XLOC_026573
TCONS_00052477 lncRNA upstream 11614 34653587 ~ 34655108 (-) True XLOC_026581
TCONS_00051786 lncRNA upstream 59241 34701214 ~ 34706737 (-) False XLOC_026582
TCONS_00051790 lncRNA upstream 125568 34767541 ~ 34778787 (-) True XLOC_026583
TCONS_00053067 lncRNA upstream 160026 34801999 ~ 34804718 (-) False XLOC_026584
TCONS_00051793 lncRNA upstream 160026 34801999 ~ 34806079 (-) False XLOC_026584
TCONS_00051779 mRNA downstream 16303 34623560 ~ 34624745 (-) True XLOC_026579
TCONS_00051778 mRNA downstream 27947 34601852 ~ 34613101 (-) True XLOC_026578
TCONS_00051777 mRNA downstream 41386 34597741 ~ 34599662 (-) True XLOC_026577
TCONS_00051775 mRNA downstream 47409 34587988 ~ 34593639 (-) False XLOC_026576
TCONS_00051774 mRNA downstream 54645 34525991 ~ 34586403 (-) True XLOC_026575
TCONS_00051780 mRNA upstream 10171 34652144 ~ 34656745 (-) False XLOC_026581
TCONS_00051783 mRNA upstream 46049 34688022 ~ 34717882 (-) False XLOC_026582
TCONS_00051784 mRNA upstream 55305 34697278 ~ 34753605 (-) False XLOC_026582
TCONS_00051785 mRNA upstream 55848 34697821 ~ 34724879 (-) False XLOC_026582
TCONS_00051788 mRNA upstream 125016 34766989 ~ 34801041 (-) False XLOC_026583
TCONS_00051772 other downstream 94649 34525942 ~ 34546399 (-) False XLOC_026575
TCONS_00051752 other downstream 537683 34102957 ~ 34103365 (-) True XLOC_026563
TCONS_00051740 other downstream 554565 34086041 ~ 34086483 (-) True XLOC_026558
TCONS_00051725 other downstream 576112 34063955 ~ 34064936 (-) True XLOC_026547
TCONS_00051722 other downstream 582331 34058679 ~ 34058717 (-) True XLOC_026544
TCONS_00051781 other upstream 10337 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051782 other upstream 10999 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051787 other upstream 101606 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051789 other upstream 125568 34767541 ~ 34775954 (-) False XLOC_026583
TCONS_00051794 other upstream 163866 34805839 ~ 34813969 (-) True XLOC_026584

Expression Profile

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