RNA id: XR_005039264.1


Basic Information

Item Value
RNA id XR_005039264.1
length 1308
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC118943909
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 3539615 ~ 3541320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACAGGTAAAGAACCCTTATGGACCTCTTTTCCCTAAGTGAAGGGATGCTTGTAGAAATGACTAACGACCATGTCAAGACGTTCCTTACACCCTCTGAAGATGTTTCCACTTCCTGCTGTGCTTTGtctctgttccaaatggcaccctattccctatctagtgcactacttttgactagggccctgttcaaagtagtgcactaaatagggaatacggtgtcatttgggacgtagttTTAAGGTGACGGGGCCATTAATCTACTGGGTTTCATAAAGCAGTTCATCTTGTTGTGGAGCTGAGCCATCCTGATGACATCAGTGTGATGTCACGCAGGCTGGCAGAGAAATGCCGTGATAAACATGTAGTACACTTTAGATAAAAACAATAGGTGCTCTGTGAAGagttctttctttcttctctctccctcctctctcacacacacacaccactctgagTCCTGAGAGGAAAGGGAGTAGCTCATTCATCACAGAGGGAATGTAATCTCCCAGGAACTACAGAGCAGCAGGAACCATTCCTCCTAGTACCTCTTCCTGTCTGAGCAGACTCCTCCTACACAGCAGACTCCTCCTACACAGCAGACTCCTCAATGGAAAGACATTAACAAGGTATCTGACATCACTAACAAGGTATCTGACATCACACTGTGTCCTGTAATGGAAAGACATTAACAAGGTATCTGACATCACACTGTGTCCTGTAATGGAAATACATTAACAAGGTATCTGACATCACTAACAAGGTATCTGACATCACACTGTGTCCTGTAATGGAAAGACATTAACAAGGTATCTGGCATCACACTGTGTCCTGTAATGGAAAGACATTAACAAGGTATCTGACATCACACTGTGTCCTGTAATAGAAAGACATTAACAAGGTATCTGGCATCACACTGTGTCCTGTAATTGAAAGACATTAACAAGGTATCTGGCATCACACTGTGTCCTGTAATGGAAATACATTAACAAGGTATCTGACATCACACTGTGTCCTGTAATGGAAAGACATTAACAAGGTATCTGGCATCACACTGTGTCCTGTAATGGAAAGACATTAACAAGGTATCTGGCATCACACTGTGTCCTGTAATGGAAAGACATTAACAAGGTATCTGGCATCACACTGTGTCCTGTAATGGAAAGACATTAACAAGGTATCTGGCATCACACTGTGTCCTGTAATGGAaagacattaacaaggtgtcTGGCATCACACTGTGTCCTGTAATGGAAAGACACCACCAACACCTGAAATGTGATTCCCTCTGTTTAGTCCGTCCtactgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2087598 lncRNA downstream 22579 3516211 ~ 3517036 (-) True G1823532
TU2087576 lncRNA downstream 86567 3450424 ~ 3453048 (-) True G1823516
TU2087575 lncRNA downstream 89803 3448985 ~ 3449812 (-) True G1823515
TU2087565 lncRNA downstream 114336 3424368 ~ 3425279 (-) True LOC118943858
TU2087560 lncRNA downstream 136047 3403207 ~ 3403568 (-) True G1823501
TU2087617 lncRNA upstream 12216 3553536 ~ 3555568 (-) False LOC118943921
TU2087614 lncRNA upstream 14319 3555639 ~ 3561047 (-) True LOC118943921
TU2087639 lncRNA upstream 36876 3578196 ~ 3579077 (-) True G1823558
TU2087645 lncRNA upstream 39628 3580948 ~ 3613716 (-) True G1823560
TU2087653 lncRNA upstream 53309 3594629 ~ 3595061 (-) False G1823565
XM_036960124.1 mRNA downstream 19604 3325040 ~ 3520011 (-) True LOC110514665
XR_005039162.1 mRNA downstream 114765 3424447 ~ 3424850 (-) False LOC118943858
XM_036960125.1 mRNA downstream 214591 3281355 ~ 3325024 (-) False LOC118943857
trnav-uac-97 mRNA downstream 299655 3239888 ~ 3239960 (-) True trnav-uac-97
trnav-uac-96 mRNA downstream 300733 3238810 ~ 3238882 (-) True trnav-uac-96
XM_036960845.1 mRNA upstream 14663 3555983 ~ 3601859 (-) False LOC118943921
XM_036959764.1 mRNA upstream 144287 3685607 ~ 3691873 (-) False LOC118936584
XM_036959765.1 mRNA upstream 144287 3685607 ~ 3691873 (-) False LOC118936584
XM_036959762.1 mRNA upstream 144287 3685607 ~ 3693195 (-) False LOC118936584
XM_036959763.1 mRNA upstream 144287 3685607 ~ 3693195 (-) False LOC118936584
TU2087596 other downstream 33343 3505577 ~ 3506272 (-) True G1823530
TU2087372 other downstream 214826 3283133 ~ 3324789 (-) True LOC118943857
TU2087084 other downstream 1022692 2513318 ~ 2516923 (-) True LOC118943899
TU2087107 other downstream 1033172 2505567 ~ 2506443 (-) False G1823141
TU2085950 other downstream 1289398 2200585 ~ 2250217 (-) True G1822333
TU2087616 other upstream 13693 3555013 ~ 3557825 (-) False LOC118943921
TU2087759 other upstream 249711 3791031 ~ 3793267 (-) False LOC118943842
TU2087757 other upstream 252003 3793323 ~ 3800554 (-) True LOC118943842
TU2087821 other upstream 303173 3844493 ~ 3846920 (-) True G1823691
TU2087841 other upstream 362401 3903721 ~ 3906049 (-) False G1823705

Expression Profile