RNA id: XM_036960823.1


Basic Information

Item Value
RNA id XM_036960823.1
length 2272
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110532916
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 3925321 ~ 3937927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacatacaaagcaaactatggtcaggatgtgacaacAAGTATAAAACctcacatggttatgggtttaaaaaAGGAAGACACCTGCACCGtgtcagatatatatatagagtttaaatgtattacatgttgagtttgcatcccaatattacattttaaatacatcacagaagactgacatataacaaaaccgtttgacataaaAACGCTGGATTTTCGGTgcgtaaaaaataataatatgttgACTAATtatgaaaaaatatgaataacattccacccttGAGGCCACTAGATGGCATTTCTGGTCATtcgactgcaggaaagggctacgacACAATATTAACAAGAGGCTTGTGCAAGTGGTGCACTTTCACAACAGAACCGTTCTGCAAAACCCCGTGTTCATGAGATCAACGTGTCTAACTTTCCCTGTTTTGCAGACTGACAGGAAGTCCAAGGACAGACAGATCTGCATCCCCTATCAAAGTGCTCTTTGACAACTTACTGCTTTTCTTGGACACATTTGTCAATGGATACCTTGGGAATGATGGACGATGGCTGCCTGTCACCAGACAATGACATGGTGACGGGAGGAGGGTCTAGCGGAGGAGGCCGGCTCCGCAGCGCAGACCTGATCCTGGGCTTCAGTAAGGACCAGTATCTCCTGCTCACTCCCGTAGGGTCCGAACGGACCCATGAAGTGGACACTGAGGGCCTGGAGGACCACCAGGGGAAGCAGGGCCAGTCAGACGCCTACAGATACCTGGCCAGCCTGGAGGACAGCACCCAGCACTCTGCCTTTCACGAGTCGGGCCTTTTCCCCAGGGACGAGTGTGACGGGGACCTGGGAGATCTCCAGAAGGGGGTGGGCAGCGGGGAAAAGTCCCCTGAGCCTCCAAAGGAGGACCGCCCTAAGAAGAAGCATCGGCGTAACCGCACCACCTTCACCACCTTCCAGCTCCATGAGTTGGAGAAGGCCTTTGAGAAGTCCCACTACCCTGACGTCTACAGCCGGGAGCTCCTGGCCATGAAGGTCTACCTCCTTGAGGTCCGTGTCCAGGTGTGGTTCCAGAACCGTCGGGCTAAGTGGAGACGTCAGGAGAAGATGGACTCCAACTCAACAAAGCTCCGCCACTCCCCCATGTTGTCTTTCAACCGGTCGCCCATGCCCTCCAATGTGGGTCTCATGTCCAACCCATTACCCCTGGACCCCTGGCTGGCATCGTCCATGTCCAGCGGCAACCCAATGCACACTATCCCCGGATATGCAGGCCCAGGGCAGGGCCCTCACTTTCAGCCTGCCTACCCCAGCCACTCCCACTCTCACAGCCACAGCTTCCTCGACAGCCCCCCAGGACATGGCATGGTGCACCAAGGGATGGTACAGGAGATGCAGTCTGTGGCCCCGCCACTCTACCAGTGCCCCTGCAGCTTCAATAATAAGTACCCTCTGCTAAGGACCTGGAACATGGTTCCAGCATCACAGCACTGAAGTTGAAGGCTAAGGAGCACATCCATTCCATGGATAAAACCTGGAAGCCGGACAATCATTTAAGGATGGTCAACCACAACAGGTGATCACAACAAAGATATTATGTTAACAATAGTGAACTTCAACATGATCAAAACAAAGACATTCTATAAAGGATGCTAAACTTCAACATGATCAAAACAAAGACATTCTATAAAGGATGCTAAACTTCAACATGATCAAAACAAAGACATTCTATAAAGGATGATTACTTCAGCAGGTAATCAAAACAAAGACATTCTATAAAGGATGATTACTTCAGCAGGTAATCAAAACAAAGATATTCTGTAAAGAGGATGGTGAACTTCAGAACAAAGACATTCTGTAtagtttatacattttttttgttaattttatttaacctttatttaagtcagATAAAGAGATATGGTCAAAAGTAATACAttatgtagggattagggtgccatttaggttgTTCTGTGTATTTAAAAGGATTATTGTCTCCATTAAGGTTTTTTTCTTATCACTTATTTATATTTGCATATTTGTACACTAAATTCTTTCTGGATGTGAAATAAAATGAacttatgtttttgtttttttacgaaTAATTCAGTGGTGCTACCATATTGAAAAGTCAGTACTAGTGATCATGTGAAATGTTATCATATTGGCATTGATTAAAGATTGTTTACACCTAATATTAGCTTTGTGTTACTGTAACAAATCCTGTCCTAGTTActgtaactagatggggcagggtgtgttacagtaactagatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2087763 lncRNA downstream 43604 3878206 ~ 3881717 (-) True G1823642
TU2087835 lncRNA downstream 51343 3873475 ~ 3873978 (-) True G1823699
TU2087830 lncRNA downstream 65500 3859573 ~ 3859821 (-) True G1823694
TU2087807 lncRNA downstream 92764 3831900 ~ 3832557 (-) True G1823683
TU2087804 lncRNA downstream 101898 3823150 ~ 3823423 (-) True G1823680
TU2087855 lncRNA upstream 10511 3948438 ~ 3948665 (-) True G1823717
TU2087863 lncRNA upstream 52714 3990641 ~ 3991228 (-) True G1823724
TU2087864 lncRNA upstream 53377 3991304 ~ 3991819 (-) True G1823725
TU2087877 lncRNA upstream 64940 4002867 ~ 4004002 (-) False LOC118943848
TU2087878 lncRNA upstream 64940 4002867 ~ 4004002 (-) True LOC118943848
XM_036960902.1 mRNA downstream 10463 3900902 ~ 3914858 (-) True LOC110531464
XM_036960901.1 mRNA downstream 29810 3868056 ~ 3895511 (-) True rel
XM_036959995.1 mRNA downstream 95104 3821289 ~ 3830217 (-) True LOC118936586
XM_036959994.1 mRNA downstream 95384 3821289 ~ 3829937 (-) False LOC118936586
XM_036959955.1 mRNA downstream 104619 3791039 ~ 3820702 (-) False LOC118943842
XM_036960586.1 mRNA upstream 12863 3950790 ~ 3974808 (-) False LOC110510589
XM_036960587.1 mRNA upstream 12863 3950790 ~ 3974808 (-) False LOC110510589
XM_036960588.1 mRNA upstream 12863 3950790 ~ 3974808 (-) False LOC110510589
XM_036960589.1 mRNA upstream 12863 3950790 ~ 3974808 (-) False LOC110510589
XM_036960591.1 mRNA upstream 12863 3950790 ~ 3974808 (-) False LOC110510589
TU2087841 other downstream 19272 3903721 ~ 3906049 (-) False G1823705
TU2087842 other downstream 20005 3903721 ~ 3905316 (-) True G1823705
TU2087821 other downstream 78401 3844493 ~ 3846920 (-) True G1823691
TU2087757 other downstream 124767 3793323 ~ 3800554 (-) True LOC118943842
TU2087759 other downstream 132054 3791031 ~ 3793267 (-) False LOC118943842
TU2088350 other upstream 723664 4661591 ~ 4662234 (-) True G1824125
TU2088833 other upstream 867537 4805464 ~ 4820448 (-) False G1824416
TU2088840 other upstream 867537 4805464 ~ 4820448 (-) False G1824416
TU2088845 other upstream 867537 4805464 ~ 4820448 (-) True G1824416
TU2088911 other upstream 988486 4926413 ~ 4926815 (-) True G1824458

Expression Profile