RNA id: XM_036960586.1


Basic Information

Item Value
RNA id XM_036960586.1
length 5674
RNA type mRNA
GC content 0.50
exon number 26
gene id LOC110510589
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 3950790 ~ 3974808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATACAGAGACTGCTTGAGCGCCATATTGGAGTGTAACTAACTAGCTATTGTTATAAATAGGGTCGGGGCTGCTGCTGGCTGAGTTTACATGTTTTCTACAAGTTTGTTCTAAGGAAAAGAGAAAGTTATCGGTGGGTCATGAAAGAAATGTCAGCGAACAGTAACAGTATGCATGGCGGGCAGCAGCCTCAGAAACACTATGGCATTACCTCATCCATTAGCATGGCCTTCCCCAGGGAGGTGGACCATCAGTACACACACAAGCTCAGCGAGGCCATGAAACCCTTTGGGGTGTTTGAGGATGAGGATGAACTCAACCACAGACTCGCAGTTCTTGGAAAGTTGAATACATTTGTCAAGGAATGGATTGCCGAGATCAGTGAAACGAAGAACCTCCCACCATCGACGATAACCAATGTGGGGGGGAAGATCTTCACCTTTGGGTCTTACCGGCTTGGAGTTCACACTAAAGGGGCGGATATTGATGCCTTGTGTGTATCGCCGCGACACGTGGAGAGGACAGACTTCTTCGACTCATTCTTTGCGAAGCTCAAACTGCACGAAGAGATCAAAGACCTACGGGCGGTGGAGGATGCCTTTGTACCTGTGATCAAATTCAAGTTTGACGGCATCGAGATTGACCTGCTGTTTGCGCGGCTGGCTCTGCAGTCCATCCCAGATAACCTGGATCTGAGAGGAGACTCCCACCTGAGGAACCTGGACATCCGCTGTATCCGCAGTCTCAATGgctgCAGAGTGACAGATGAGATCCTGTACTTGGTACCAAACAAGGAGAACTTCAGACTAACCCTGAGGGCCATCAAGCTGTGGGCCAAACGCCGGGGGATCTACTCCAACATGTTGGGCTTCCTGGGTGGAGTCTCCTGGGCCATGCTGGTAGCCAGGACCTGCCAGCTCTACCCCAACGCTGTGGCCGCCACTCTCGTACACAAGTTCTTCCTCGTCTTCTCCAAATGGGAATGGCCAAATCCTGTGCTTTTGAAACAGCCCGAAGACAGCAATCTGAATCTGCCTGTTTGGGATCCACGAGTGAATCCGTCAGACCGGTACCACCTGATGCCCATCATCACGCCAGCCTACCCCCAGCAGAACTCTACCTACAACGTCTCCTCTTCCACACGCACCATCATGAGCGAGGAGTTCAAATACGGTCTCAGTGTCACAGATGACATCCTTCAGGGGAAAACCGACTGGTCCAAACTGTTCCAGCCACCCAACTTTTTCCTGAAGTACAAGCATTATATTGTTCTGACTGCCAGTGCTTCCACAGAAGAAAACCAATTAGAATGGATTGGTCTGGTGGAGTCTAAGATCCGTGTCCTGGTGGGGAACCTGGAGAGGAATGAGTACATCACCCTGGCACACGTCAACCCCACATCCTTCCCCGGGAACAAGGAGAGCTGTAGCGAGAACGAGTTTGTCTCCATGTGGTTCATTGGGATCATCTTCAAGAAAGTGGAGAACGCTGAGAGCGTCAACATCGACCTGACCTACGACATCCAGTCCTTCACAGATACAGTTTACAGGCAGGCCAACAACATCAACATGCTGAAGGATGGGATGAAGATCGAAGCGACACACGTGAAGAAGAAGCAGCTCCACCAGTACCTTCCTGTTGAGCTGGTGCAGAGGAAGAAGAGGAGCATAGTGGAGCTGAACCGGAACTCCAACGGCGGGAGTTCCAAGCGGTCCTCTCTCGACGGCAGTCAGCTGGACAGTTCCAGAGACACTGACTCCGGGACTCCCTTCAGCTCTCCCACCTCCGTCTGCAAGCCGTCCAGGCCGGCCGCCTCAGACACAGACGACAGTTTGACACCCCCCAAGCTGCCAGCCTCTCTGTTTGTGGAGAGCAGCTCCTCGGTGCCAGACGTCTCGCCACCCAGGACCGATCCTGAGAAGGGGTTGTCCATCCCCGTCATTGGATCAAagTCCAagccctctgccccaacgggcccagTCGGTAGCACCATTCCTACGGTAGTGGGTAGGAGCGTGGTCTCTCTCGGCACTACAGAGCAGCACCAGAACGGATCCAAGAGACTCCACTCCCCTACGCTGGAGGATCAGTCCAAGAGGCTGAAAGACAGCGCAGAGCCGCTGGCTGATGTGTTGACCTTCAAGGAGCCGTTCCCTCCATCTGGCGACGGCAGGGAGCAAGGGGACGGAGTCCAAGTGGTGAGTCCTCCAGCAGGCAGCACCATTCCTACAGTAGTAGGCAGGAGTGTTGTACCCTGCCTGGGCTCCTCTAGAGATACATCCGGCCCGACAGAGCAGAGCCAGAACGGAGCCACCGCTGCAGCCAAGAGACCTCACTCCCCCACACAGGACGGACCCCCCAAGAGGATACGAGACCCTGCAGATCTGctggtGTCCGGTGATGACTCTGCATTCAAGGAGCCGTTCCCTTTGTCTAGCGACGGCCAGGAGCAAGGGGACGGAGTGAACGTCGAAAGTCTTGGAGGGGTAAAGGCTATGCCTATTCCAACTATCGACACATCAAGAACACAGAGACTTCCCAGTATGGAGCTGCCAGACGTGacctctcccctccccagcaGTAACCACCAGCGGGTGGTTAAGAACTCCATCAGACTAGCCCTCAACAGGCACAGGTAACCCCAggtaacgcccccccccccccccccccccccccccccccaaaccccttCCTTCACGAGGCCAGGACCTACAACACTGACTAGCTCCAGACCTGAGAGATCCAAAATCAAGACTACTGTGGTAAAACCTAGTGAGGAAGCCGATTTTTAACTCTCCCGCTCACCCCACCCTGTCACTGGACGATGTGCAAACGACAGTcccttgttcccccccccccccccccaaaaaaaatgtcaTCTCTGTTTCTATGGTCCCCTTCCCAGTTGAGCCTGAAGCAGAAATTAAAATGCTGATTTAAGATTGGGTTGGAGAAGAgttggatttatttatttattttttgtaaatttcccccccctcttcctttaCTGTGTGTAGTTTTTAAATGGCCTTAACGTGTCGATGCTTGCTACTACACCTGTCTGTACCATCCTACTGTTTTGACAAATGGGAAAGTTCTACAGTAGGTGTAGTTTATTGTACATAGctcgtctttaaaaaaaaaattaaaaaaagaatCACAGACGTTTAGTCTTTCCATACAGCTGTTATAGTTTTATGAtctaaaatgaagaaaaaaaaatgtttaaaaaatgtattgcccccccccccactgtttGTCAACCACATTACAACGTGACCTTGATAGCCAATCTCAGCCTTCCCACCCAGTAGACTCAGCAACTTGGGTTGTGTTCATTTGGGCCCAACATatgaaaatgttttgcaacagaaacctAAAATGAGCATTCCTTTTTGGATAAGTTCAGATGGTACCTCCCTTTTTTCTTCCTGTATATTCCCCCCTCTAGGTTAACAGGACCTCCTGTGTATATTCCCCCCTCTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCTGTGTATATCCCTTCCTCTAGGTTAGCAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCTGTGTATATCCCTTCCTCTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTTGGTTAGCAGGACCTCCTGTGTATATCCCTTCCTCTAGGTTAGCAGGACCTCCTGTGTGTATCCCTTCCTCTTGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTAGGTTAACAGGACCTCCTGTGTATATCCCTTCCTCTAGGTTAACAGGACCTcctgtgtatatcccccccccgccccctctaGGTTGGTTAACAGGACCTCCTGTGTATATCCCTTCCCACTTGGTTAGCAGGACCTCCTGTGTATATCCCTCCCTCTTGGTTAGCAGGACCTCCTGTGTATATCCCTCCCTCTTGGTTAGCAGGACCTCCTgtgtatgcccccccccccccctctaggtTGGTTAAAAGGACCTCCTGTGTACATCCTCCCTCTTCGTTAAAGGGCCTCCTGTATGTTCTCTCTCAAGCTTTGACACCCACTAGAATAGAGAACCAACTCTCCTGGAGATCTACTGGGTATTGtaggcttttgctccagccctgCACTAGATTCACACAACTGATACAGCCAACCAGGGTCCTGAGGGGCAGAtcattagtagaatcaggtgttttTATAGTAGggttggaacacaaccctgcgtGCGGTAGGCTACTGTTCCCCAGGCAGCTCTAGAACCCAGGGAATGTACTGAACATGAGGGACTGGACGGTTGTGTTGCGCTAGCAGGGTCATGGTTGTGAAGTGGTTCACCGCTGGATTTGTGTTACGGAAAGGGTTTCAAGCttttgctggtgtgtgtgtgtgaggatgttGGTGTAcatgagttagtgtgtgtgtgttgtaattcCCTCAGTGTGGGGTGTTGATCCTCTGCACCTCCCGTGGAGGTTCTTAAACATGGCGTCTCCTGGGGTCATCCTGGGCTGAGTCCCAAAAAGCACCCTattctatatatagtgtactacttttgaccagagccataaatggccctggtcaatagaagtgccctctgtagggaatagggtgcaatttcagATGCGGTCTGGTCGAGGAGTTGAcctctcaaatcaaatttcaGGACTCATACTCACAAAATGTCTGAGtacgagtgctgatctaggatcaggtcccccttgtcTATATAATGTTGTTCGTTTTAAGCAATCGGCCACGAGCGggtgtggtatacggccaatatTCCGCGTCTATGGGCTGTTCTTATGCGCAACGAGGAGTGCCTGGATacggcccttagccgtggtatattgtccatattccacaaacccccgaggtgctttATTGCAATTATAAACTGATTATCAACGTAATTACactagtaaaaaataaatgtttttgttatacccgtggtatatggtccgATATACCATggatgtcagccaatcagcattcagggcttgaaccacacAGCTTATCTGATTTTTAAATGTCAAAACCGACTGTAGATCAGCTGTGGTGCTCTGAGGCCCTTTTGAGTACAAGCCCTGCTCTCTGTTAAacagtgatctctctctctccattctaccCTGGTTCGGTGTACAGAAAGCATctgcttgcatcccaaatggcaccctattccctacatggggctctggtcaagagtagtgcactaaatagggaaatagggtgttatttgggactcACCCTATGTATTATAACAGGTGTATTCTCTTcatatctttttgttttcttattGCTTTGTGTGTATTTGTACGGTTTTGTATCATCTGCTCTAACAGCTGAAGCCTCTCAATGACTTTTACACCACTCGGTTTTCCAACAGCTTTCTCTGTGCTTTTTGAGAAACAATTAAACAGGTCATTTATCcgttgtttttttttgtagggCAACAAGTTGTATTGGAAAAAGGTATTTTTGTATGTATTGTCTATCACCTTTAAACGAGACCATTAAATCCATAAAACCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2087855 lncRNA downstream 2125 3948438 ~ 3948665 (-) True G1823717
TU2087763 lncRNA downstream 69073 3878206 ~ 3881717 (-) True G1823642
TU2087835 lncRNA downstream 76812 3873475 ~ 3873978 (-) True G1823699
TU2087830 lncRNA downstream 90969 3859573 ~ 3859821 (-) True G1823694
TU2087807 lncRNA downstream 118233 3831900 ~ 3832557 (-) True G1823683
TU2087863 lncRNA upstream 15833 3990641 ~ 3991228 (-) True G1823724
TU2087864 lncRNA upstream 16496 3991304 ~ 3991819 (-) True G1823725
TU2087877 lncRNA upstream 28059 4002867 ~ 4004002 (-) False LOC118943848
TU2087878 lncRNA upstream 28059 4002867 ~ 4004002 (-) True LOC118943848
TU2087881 lncRNA upstream 44000 4018808 ~ 4020441 (-) True G1823734
XM_036960823.1 mRNA downstream 12863 3925321 ~ 3937927 (-) True LOC110532916
XM_036960902.1 mRNA downstream 35932 3900902 ~ 3914858 (-) True LOC110531464
XM_036960901.1 mRNA downstream 55279 3868056 ~ 3895511 (-) True rel
XM_036959995.1 mRNA downstream 120573 3821289 ~ 3830217 (-) True LOC118936586
XM_036959994.1 mRNA downstream 120853 3821289 ~ 3829937 (-) False LOC118936586
XR_005039154.1 mRNA upstream 25127 3999935 ~ 4001461 (-) True LOC118943849
XR_005039153.1 mRNA upstream 27894 4002702 ~ 4006322 (-) False LOC118943848
XM_036960373.1 mRNA upstream 32273 4007081 ~ 4038273 (-) False LOC110531385
XM_036960372.1 mRNA upstream 32273 4007081 ~ 4038275 (-) False LOC110531385
XM_036960780.1 mRNA upstream 1176572 5151380 ~ 5153631 (-) False LOC118943901
TU2087847 other downstream 14747 3933893 ~ 3936043 (-) True G1823710
TU2087841 other downstream 44741 3903721 ~ 3906049 (-) False G1823705
TU2087842 other downstream 45474 3903721 ~ 3905316 (-) True G1823705
TU2087821 other downstream 103870 3844493 ~ 3846920 (-) True G1823691
TU2087757 other downstream 150236 3793323 ~ 3800554 (-) True LOC118943842
TU2088350 other upstream 686783 4661591 ~ 4662234 (-) True G1824125
TU2088833 other upstream 830656 4805464 ~ 4820448 (-) False G1824416
TU2088840 other upstream 830656 4805464 ~ 4820448 (-) False G1824416
TU2088845 other upstream 830656 4805464 ~ 4820448 (-) True G1824416
TU2088911 other upstream 951605 4926413 ~ 4926815 (-) True G1824458

Expression Profile