RNA id: TCONS_00053067


Basic Information

Item Value
RNA id TCONS_00053067
length 2378
lncRNA type sense_over
GC content 0.32
exon number 2
gene id XLOC_026584
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34801146 ~ 34816979 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTCACAACCACATagcatgaacTGCATTATAACTCTATTTGAAATGTATATACGTAGATCTCTGGTAGAGCAAAGCTGATATAAGAATGATTCACCTCCCTTGCAAATCCGGGGGCTGTTGTGTTGAGTTTGCCCATACAAGATTCCCCATATTACCAATTCAACGGTTTTAGGCCTCTCAAAAGGAAGCCCCTGGCCTCGCTCCAGGCCTACCTCTCGAACAGACAGCGTTCTTGGACTTTTTATTGTCGAGCGGAAAGGTTTGAATAAGCTGCTGTCATCAGGATGGGCTTGTGAGCTGTTGTCATTCCTGCCCTTCCTCCTCCTCCCTCTTTGTACATAACGTTGCCAAGCGCCTCTGTCTGGCCTGTCATGCTGTTGCCCTTTTTTATAAcgctaaaaaaaacataataaagtcACCAAGAAAACATGTTTCTGAGTGATTTTGTATAATGTTTGTAATTAATTTTTCTTTCACAACTTAATATGCACAAAACTGTAAATAACATCTGTCAGTTTACCTGAAAAATGTGAATTCAGTAATCTTTCTTCACAACCAGCTCAACAATGAACTAGtaggctctatgcacagctagagttttaaagccaatgataaacctccggtgaaagcttaatgttactatctttcaatttcacaaggttgttttagCAGCATCGATTTTTGTAATGCAATTACAATACATTTCAGCACAACAGACTTAAGCATTCTTTTAGTTATTTAAGCATAAAACTAGATGAAAGACCGTTGTAACCACTAGACCCGTCAGTAGCACGAGGCTAGCGCTAAAAAATCCATTGAAAATATTGGCATAAAATAAgtggtcatattttaaagacatgcagggggaaatgaaatttaatgcagtgcttcttgtctgatctgagaTCTACTTCATATCGTAAATCGTAAAAGAAGCCATTGGGCTGCCTGGAAGCCATTGgactgcctggctgaaaattaaaagtctgtgtgcatatagcctattACGGGGGTTAGGAATGGATTTTCTGTAGTCAAAAAACAATTTGTTCATTATTTCAATTGGATAATGTTCTAGTTTAGTTTAATATTAAGGTAAGAATAATTTTGAAGTCAATACTAGTTTTATTAGTGAAACATTggcataaaaaactaaatactaaccagaaattgtaatatgtaatgatcTAATACTGTGGTTGTCAAACTTTttccatcaagtaccacctcagaaaaaaatagtctctccaagtaccaccaaaaatgagcagtattgaaatacagtagcgtagtataGGCCCAGTAAAAGCAGATACAACTCTGGCAGATTacttcagaaatataggctatatggcatattatatacatcatttttgataaattataaaatgtgtgtagcatgtacatgacattttattcctctgcgtaccactagaaggaagcctgcgtaccactagtggtacatgtaccacagcttgagaaccactgatctattaatattgactttaaaatgtaagTGGCATACGTATATATGTATGATATGATAAATGCAAGATATAAGAAAATAAGCAATAAGGCTAAACTAATGAAAAtgagtagaaaaaaatatttgggTGGGGGTCTGCACGTTTttctataatttttaaaaaatttaacgtgtaattgatttaatttgattgacttattgctaattattttttaaaaatgtgaatccTATTTAATCATATTCTTAATTTTTTGtgatctttttttgtttattcttaaGTATTGTGTGcttgttaataaatataaattcttcAAATTATTGTTGTAGTTTATTGTTTAAGTGTCATTAATATCACATGAATATAAATGGGTCTAAAATATTTGGAAATACATATTCATATatgattataatattaaatatattttattactttaaaaatatatcatcATTTCATAAAATTTacctaataaattatttttcttcaaatatttccgaCTGGTTTTcgcatatttttaaatttttatttatttatttattgcataacCATCaggaacaaacacaaaacacaatatAAATTATGGAAccttgaaaaaatttaaataacaatggtaaaaaacattgataaataaaaataaaaaatgtaattaattacacaaagTATAGTGTACAGCATTTCTACATCCAATGATTTTAAGAATTGAAAGGGGAatcaaaaaagtgttttaataatTGATGCATCTCTAAGATTTCTTTCTTTCAACAATTCCACAGTAGAAATAAAGAAGTCAAACTCGATACACAACTGTTATTGTGGGAGATGATTTAGCAAATTTCTGCTTGTGTATGTGAAACTTTGCCAACAAAATAAAGAGATTAACAATATATTCAAG

Function

GO:

id name namespace
GO:0048863 stem cell differentiation biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0043248 proteasome assembly biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0005829 cytosol cellular_component
GO:0008541 proteasome regulatory particle, lid subcomplex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051790 lncRNA downstream 23212 34767541 ~ 34778787 (-) True XLOC_026583
TCONS_00051786 lncRNA downstream 95262 34701214 ~ 34706737 (-) False XLOC_026582
TCONS_00052477 lncRNA downstream 146891 34653587 ~ 34655108 (-) True XLOC_026581
TCONS_00052476 lncRNA downstream 160026 34641048 ~ 34641973 (-) True XLOC_026580
TCONS_00051776 lncRNA downstream 208943 34591917 ~ 34593056 (-) True XLOC_026576
TCONS_00053068 lncRNA upstream 142684 34947402 ~ 34948061 (-) False XLOC_026585
TCONS_00053069 lncRNA upstream 760410 35565128 ~ 35574451 (-) True XLOC_026588
TCONS_00051803 lncRNA upstream 1052412 35857130 ~ 35858160 (-) False XLOC_026591
TCONS_00051804 lncRNA upstream 1057658 35862376 ~ 35864621 (-) True XLOC_026591
TCONS_00051807 lncRNA upstream 1288922 36093640 ~ 36115291 (-) True XLOC_026592
TCONS_00051788 mRNA downstream 958 34766989 ~ 34801041 (-) False XLOC_026583
TCONS_00051784 mRNA downstream 48394 34697278 ~ 34753605 (-) False XLOC_026582
TCONS_00051785 mRNA downstream 77120 34697821 ~ 34724879 (-) False XLOC_026582
TCONS_00051783 mRNA downstream 84117 34688022 ~ 34717882 (-) False XLOC_026582
TCONS_00051780 mRNA downstream 145254 34652144 ~ 34656745 (-) False XLOC_026581
TCONS_00051796 mRNA upstream 730403 35535121 ~ 35541381 (-) False XLOC_026586
TCONS_00051797 mRNA upstream 731262 35535980 ~ 35541378 (-) True XLOC_026586
TCONS_00051798 mRNA upstream 746152 35550870 ~ 35554809 (-) True XLOC_026587
TCONS_00051799 mRNA upstream 784494 35589212 ~ 35602233 (-) True XLOC_026589
TCONS_00051800 mRNA upstream 828055 35632773 ~ 35801146 (-) False XLOC_026590
TCONS_00051789 other downstream 26045 34767541 ~ 34775954 (-) False XLOC_026583
TCONS_00051787 other downstream 48458 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051781 other downstream 145262 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051782 other downstream 147001 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051772 other downstream 255600 34525942 ~ 34546399 (-) False XLOC_026575
TCONS_00051794 other upstream 1121 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051795 other upstream 142920 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051816 other upstream 1429489 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051818 other upstream 1435594 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051819 other upstream 1436950 36241668 ~ 36246795 (-) True XLOC_026597