RNA id: TCONS_00051794


Basic Information

Item Value
RNA id TCONS_00051794
length 734
RNA type nonsense_mediated_decay
GC content 0.50
exon number 8
gene id XLOC_026584
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34801146 ~ 34816979 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCTTGGATATGGAGGCAGCTACCGGTCAGGAGGTGGAGCTGTGTTTGGAGTGCATTGAATGGGCCAAATCAGAGAAGAGGACCTTTCTACGGCAGAGCTGAAGAAGATGGATGATAAAGCTCTGCTGGTGGAGCTGCAGCTGCTGGAGAGCAAGACATATCATGCCCTGAGCAACTTGCCCAAGGCCAGAGCAGCTCTCACCTCCGCCAGGACCACCGCAAACGCCATCTACTGCCCCCCAAAGCTGCAGGCTGCTCTAGACATGCAGTCAGgAATTATTCATGCTGCTGAGGAGAAGGACTGGAAGACAGCGTATTCATACTTTTACGAGGCGTTTGAAGGCTACGACTCTATTGACAGTCCTCGTGCCATCACTGCACTTAAGTACATGCTTCTCTGCAAGATCATGTTGAACTCGCCAGAGGATGTGCAGTCCCTGATCAGCGGAAAACTTGCCCTCAGATATGCAGGCAGACAGACAGAAGCACTTAAATGTGTGGCACAAGCCAGCAAGAATAGGTCACTTGCAGATTTTGAGAAGGCTTTAACAGAATACAAAGCTGAGCTGCGGGACGACCCCATCATCAGCACTCATCTCACCAAACTCTATGACAATCTGCTGGAACAAAACCTCATTAGGGTCATCGAGCCCTTCTCCAGAGTGCAGATTGAACACATTTCAGAGCTAATAAAGCTTTCCAAGGGGGATGTTGAAAGAAAACTCTCACAGAT

Function

GO:

id name namespace
GO:0048863 stem cell differentiation biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0043248 proteasome assembly biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0005829 cytosol cellular_component
GO:0008541 proteasome regulatory particle, lid subcomplex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2711 Predicted to enable structural molecule activity. Predicted to be involved in proteasome assembly; stem cell differentiation; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD11 (proteasome 26S subunit, non-ATPase 11).

Ensembl:

ensembl_id ENSDART00000151537

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053067 lncRNA downstream 1121 34801999 ~ 34804718 (-) False XLOC_026584
TCONS_00051790 lncRNA downstream 27052 34767541 ~ 34778787 (-) True XLOC_026583
TCONS_00051786 lncRNA downstream 99102 34701214 ~ 34706737 (-) False XLOC_026582
TCONS_00052477 lncRNA downstream 150731 34653587 ~ 34655108 (-) True XLOC_026581
TCONS_00052476 lncRNA downstream 163866 34641048 ~ 34641973 (-) True XLOC_026580
TCONS_00053068 lncRNA upstream 133433 34947402 ~ 34948061 (-) False XLOC_026585
TCONS_00053069 lncRNA upstream 751159 35565128 ~ 35574451 (-) True XLOC_026588
TCONS_00051803 lncRNA upstream 1043161 35857130 ~ 35858160 (-) False XLOC_026591
TCONS_00051804 lncRNA upstream 1048407 35862376 ~ 35864621 (-) True XLOC_026591
TCONS_00051807 lncRNA upstream 1279671 36093640 ~ 36115291 (-) True XLOC_026592
TCONS_00051788 mRNA downstream 4798 34766989 ~ 34801041 (-) False XLOC_026583
TCONS_00051784 mRNA downstream 52234 34697278 ~ 34753605 (-) False XLOC_026582
TCONS_00051785 mRNA downstream 80960 34697821 ~ 34724879 (-) False XLOC_026582
TCONS_00051783 mRNA downstream 87957 34688022 ~ 34717882 (-) False XLOC_026582
TCONS_00051780 mRNA downstream 149094 34652144 ~ 34656745 (-) False XLOC_026581
TCONS_00051796 mRNA upstream 721152 35535121 ~ 35541381 (-) False XLOC_026586
TCONS_00051797 mRNA upstream 722011 35535980 ~ 35541378 (-) True XLOC_026586
TCONS_00051798 mRNA upstream 736901 35550870 ~ 35554809 (-) True XLOC_026587
TCONS_00051799 mRNA upstream 775243 35589212 ~ 35602233 (-) True XLOC_026589
TCONS_00051800 mRNA upstream 818804 35632773 ~ 35801146 (-) False XLOC_026590
TCONS_00051789 other downstream 29885 34767541 ~ 34775954 (-) False XLOC_026583
TCONS_00051787 other downstream 52298 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051781 other downstream 149102 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051782 other downstream 150841 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051772 other downstream 259440 34525942 ~ 34546399 (-) False XLOC_026575
TCONS_00051795 other upstream 133669 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051816 other upstream 1420238 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051818 other upstream 1426343 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051819 other upstream 1427699 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051846 other upstream 1942064 36756033 ~ 36756149 (-) True XLOC_026612

Expression Profile

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