RNA id: TCONS_00053068


Basic Information

Item Value
RNA id TCONS_00053068
length 660
lncRNA type intronic
GC content 0.42
exon number 1
gene id XLOC_026585
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34947402 ~ 34948061 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTTTCAGCTGCGCTTCAGCTCAAACATGGCAGACATTTTTGTCGGAAGGTAGAACTTGAAGAAGAGCAAGAATATTGATGAGTACATGAAAACCCTTGGTGTTGGCCTTGCCACGCGTCAAGTTGCCAACATGATCAAACCCACAACCATCATCTCCAAGGAGGGTGACGTTTTCACAATTAAAACCGCCAGCACTTTTAAATCCACAGAAATCAATTTCAAACTGGGAGAGTAGGTCAACGAGACCACTGCAGACTACCGAAAAGTCAAGTCTATTATAACTTTAGATGGAGGGAAGTTGTTGCATGTTCAGAAATGGGATGGTAAAAAGATGACCCTGCTCTGAGAAGTCAGTGACAATAGCCTCACTCTGACGTTGACACTTGGAGACGTCGTCTCCACACAACACTACATAAAAGCAGAATAAGGGGAAAGCTGAGTCTCAATCCGTCCTCATCAATGGTTATGTACATGTCCAATGTTTTTTCTGTGGTGTTCGTGCTGTCTTTTGCACCATTTCCCAAACAAACACTGAATAAATTCCAACTTCCAAACCTTCAAATTTCTGTATATGATCTTGTATTTCTGGGTGTATGACATGCCCGGCGGTCAGTGTTATTATAAATACGCATTTGGTCTACAGTAAATATGATTATGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051793 lncRNA downstream 141323 34801999 ~ 34806079 (-) False XLOC_026584
TCONS_00053067 lncRNA downstream 142684 34801999 ~ 34804718 (-) False XLOC_026584
TCONS_00051790 lncRNA downstream 168615 34767541 ~ 34778787 (-) True XLOC_026583
TCONS_00051786 lncRNA downstream 240665 34701214 ~ 34706737 (-) False XLOC_026582
TCONS_00052477 lncRNA downstream 292294 34653587 ~ 34655108 (-) True XLOC_026581
TCONS_00053069 lncRNA upstream 617067 35565128 ~ 35574451 (-) True XLOC_026588
TCONS_00051803 lncRNA upstream 909069 35857130 ~ 35858160 (-) False XLOC_026591
TCONS_00051804 lncRNA upstream 914315 35862376 ~ 35864621 (-) True XLOC_026591
TCONS_00051807 lncRNA upstream 1145579 36093640 ~ 36115291 (-) True XLOC_026592
TCONS_00053070 lncRNA upstream 1372178 36320239 ~ 36323625 (-) True XLOC_026600
TCONS_00051791 mRNA downstream 130423 34801146 ~ 34816979 (-) False XLOC_026584
TCONS_00051792 mRNA downstream 130509 34803948 ~ 34816893 (-) False XLOC_026584
TCONS_00051788 mRNA downstream 146361 34766989 ~ 34801041 (-) False XLOC_026583
TCONS_00051784 mRNA downstream 193797 34697278 ~ 34753605 (-) False XLOC_026582
TCONS_00051785 mRNA downstream 222523 34697821 ~ 34724879 (-) False XLOC_026582
TCONS_00051796 mRNA upstream 587060 35535121 ~ 35541381 (-) False XLOC_026586
TCONS_00051797 mRNA upstream 587919 35535980 ~ 35541378 (-) True XLOC_026586
TCONS_00051798 mRNA upstream 602809 35550870 ~ 35554809 (-) True XLOC_026587
TCONS_00051799 mRNA upstream 641151 35589212 ~ 35602233 (-) True XLOC_026589
TCONS_00051800 mRNA upstream 684712 35632773 ~ 35801146 (-) False XLOC_026590
TCONS_00051794 other downstream 133433 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051789 other downstream 171448 34767541 ~ 34775954 (-) False XLOC_026583
TCONS_00051787 other downstream 193861 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051781 other downstream 290665 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051782 other downstream 292404 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051816 other upstream 1286146 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051818 other upstream 1292251 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051819 other upstream 1293607 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051846 other upstream 1807972 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 2019810 36967871 ~ 36967993 (-) True XLOC_026618

Expression Profile

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