RNA id: XM_036960773.1


Basic Information

Item Value
RNA id XM_036960773.1
length 2036
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC118943901
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 5151380 ~ 5153682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAGACTCAGTCAATACAGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTATGTTGGGGGAGATGTTGGTATCTACACTACGTTGGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTATGTTGGGGGAGATGTTGGTATCTACACTATGTTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGAGGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACATTGGGGGAGATGTTGGTATCTACACTACATTGGGGGAGATGTTGGTATCTACACTACATTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAAATGTTGGTATCTACACTACATTGGGGGAGATGTTGGTATCTACACTACATTGGGGGAGATGTTGGTATCTACACTACATTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACGTTGGAGGAGATGTTGGTATCTACCCTACATTGGGGGAGATGTTGGTATCTACACTACATTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACGTAGGGGGAGATGTTGGTATCTACACTTTGTTCGGGGAGATGTTGGTATCTACACTACGTAGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGGTATCTACACTACATTGGGGGAGATGTTGGTATCTACACTACATTGGGGGAGATGTTGGTATCTACACTACGTTGGGGGAGATGTTGCCTACGTTGCCAGTTTTCTTCTTCGTGTAACGAGGCTGAGGTCAGACAACGCAACGTTCACACAATTTTAGTTTCAGTTACGGTTTGAAAGTGACATCGTTTCAAACAATTTTGCTGATTACGGGACACAACTCAAACACACCTGAAATCGCCCGCAACAGTCAATCACATTGAATCTGCTTTAGTCATGTCAATCCAAATAATGTTATAACCCACCTCATAGAccaatgattattataatgttataaaCCCACCTCATAGAccaatgattattataatgttataaaCCCACCTCATAGGtcaatgattattataatgttataaaCCCACCTCATAGAccaatgattattataatgttataaaCCCACCTCATAGAccaatgattattataatgttataaaCCCACCTCATAGAccaatgattattataatgttataaaCCCACCTCATAGGTCAATGATTATTGTAATGTTATAAACCCACCTCATAGAccaatgattattataatgttataaaCCCACCTCATAGGccaatgattattataatgttataaaCCCACCTCATAGAccaatgattattataatgttataaaCCCACCTCATAGGtcaatgattattataatgttataaaCCCACCTCATAGAccaatgattattataatgttataaaCCCACCTCATAGACCAATGATTATTACAATGTTATAAACCCACCTCATAGAccaatgattattataatgttataaaCCCACCTCATAGGtcaatgattattataatgttataaaCCCACCTCATAGAccaatgattattataatgttataaaCCCACCTCATAGAccaatgattattataatgttataaaCCCACCTCATAGGtcaatgattattataatgttacaAACCCACCTCATAGAccaatgattattataatgttataaaCCCACCTCATAGGtcaatgattattataatgttataaaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2089029 lncRNA downstream 4100 5146517 ~ 5147280 (-) True G1824530
TU2089028 lncRNA downstream 4161 5146517 ~ 5147219 (-) False G1824530
TU2089016 lncRNA downstream 48915 5101947 ~ 5102465 (-) True G1824518
TU2089010 lncRNA downstream 68539 5082588 ~ 5082841 (-) True G1824512
TU2088986 lncRNA downstream 97634 5053546 ~ 5053746 (-) True G1824499
TU2089006 lncRNA upstream 18399 5172031 ~ 5172524 (-) False LOC118943892
TU2089007 lncRNA upstream 18399 5172031 ~ 5172524 (-) False LOC118943892
TU2089059 lncRNA upstream 36926 5190558 ~ 5191904 (-) True G1824546
TU2089061 lncRNA upstream 44878 5198510 ~ 5198871 (-) True G1824548
TU2089072 lncRNA upstream 66163 5219795 ~ 5293782 (-) True G1824557
XM_036960372.1 mRNA downstream 1113105 4007081 ~ 4038275 (-) False LOC110531385
XM_036960373.1 mRNA downstream 1113107 4007081 ~ 4038273 (-) False LOC110531385
XR_005039153.1 mRNA downstream 1145058 4002702 ~ 4006322 (-) False LOC118943848
XR_005039154.1 mRNA downstream 1149919 3999935 ~ 4001461 (-) True LOC118943849
XM_036960594.1 mRNA downstream 1176572 3957781 ~ 3974808 (-) True LOC110510589
XM_036960681.1 mRNA upstream 18771 5172403 ~ 5203222 (-) False LOC118943892
XM_036960682.1 mRNA upstream 18771 5172403 ~ 5203225 (-) False LOC118943892
XM_036960676.1 mRNA upstream 18771 5172403 ~ 5321235 (-) False LOC118943892
XM_036960678.1 mRNA upstream 18771 5172403 ~ 5321235 (-) False LOC118943892
XM_036960679.1 mRNA upstream 18771 5172403 ~ 5321235 (-) False LOC118943892
TU2089022 other downstream 30436 5119760 ~ 5120944 (-) True G1824524
TU2088911 other downstream 224565 4926413 ~ 4926815 (-) True G1824458
TU2088833 other downstream 330932 4805464 ~ 4820448 (-) False G1824416
TU2089053 other upstream 12176 5165808 ~ 5166374 (-) True G1824540
TU2089076 other upstream 82745 5236377 ~ 5236732 (-) True G1824561
TU2089080 other upstream 93376 5247008 ~ 5247957 (-) False G1824563
TU2089138 other upstream 184941 5338573 ~ 5339901 (-) True G1824605
TU2089520 other upstream 791480 5945112 ~ 5999105 (-) True LOC110514830

Expression Profile