RNA id: TCONS_00053069


Basic Information

Item Value
RNA id TCONS_00053069
length 751
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id XLOC_026588
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 35565128 ~ 35574451 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCTTTAATCTCTGGTGCTTTGTTAGCGGACCATGTGGTGTAGAAACAGCAGTGCCTTATGGGGAATAGGTCTGGGACGAAGTCATCCACAGCAtttcacatcatcagcagctGAGAGAGAGGATAAGCTGCAATGATGACTTCTGTATGACTAATTCCTCTCCCTCGGGTTGGACTGGAAACACAAGGCTGTCCTATGTGGCGAGAAATCTCAGAGCTCCAcagtcctcctcctcctcctcctccaccaacTGTGGTAAAATATGATTCACCATCTCAGGAGCTATTCTTGGTGTCTTCGTCTTATGCATGAAGCAAAAAACTTGAAAGGAACACTGGTATTGCCTGCGATGATCTCTGGTTTTAAGGTTCAGGGTACTTGCATAGAAGGACATGCTTGTCAAATGAAAGCAAACGTCTTCTCAGTCTTCTTTAGGAAGGAAGTCCACATTGGCGCTTTGGTTATTGAGGGCCTGCTCCAGCAAGGCTCTTTGTGTGATTGCAGGCAGGTAGAAGAACGCGTAGACCAGTCCCAAAAGCAGAAGGGCGATGATTAGGGGAAGTCCCCAATCTGTAGTCATTATCGGCTCTTGACAACGGGCCTGGAGGAAAGAGCCCTGCATTGTGCTGGTGGAAAAAAAGACTGAGAAATGTGACCTCTGCGTCCGCTGTCCAGAGACCGATTGAAAGTGTGTTTCCTGTTTTCTTCTTTTGGTGGGACAAACCAGCCACCAGCCGCTCTGCTTGGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053068 lncRNA downstream 617067 34947402 ~ 34948061 (-) False XLOC_026585
TCONS_00051793 lncRNA downstream 759049 34801999 ~ 34806079 (-) False XLOC_026584
TCONS_00053067 lncRNA downstream 760410 34801999 ~ 34804718 (-) False XLOC_026584
TCONS_00051790 lncRNA downstream 786341 34767541 ~ 34778787 (-) True XLOC_026583
TCONS_00051786 lncRNA downstream 858391 34701214 ~ 34706737 (-) False XLOC_026582
TCONS_00051803 lncRNA upstream 282679 35857130 ~ 35858160 (-) False XLOC_026591
TCONS_00051804 lncRNA upstream 287925 35862376 ~ 35864621 (-) True XLOC_026591
TCONS_00051807 lncRNA upstream 519189 36093640 ~ 36115291 (-) True XLOC_026592
TCONS_00053070 lncRNA upstream 745788 36320239 ~ 36323625 (-) True XLOC_026600
TCONS_00051826 lncRNA upstream 854505 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00051798 mRNA downstream 10319 35550870 ~ 35554809 (-) True XLOC_026587
TCONS_00051796 mRNA downstream 23747 35535121 ~ 35541381 (-) False XLOC_026586
TCONS_00051797 mRNA downstream 23750 35535980 ~ 35541378 (-) True XLOC_026586
TCONS_00051791 mRNA downstream 748149 34801146 ~ 34816979 (-) False XLOC_026584
TCONS_00051792 mRNA downstream 748235 34803948 ~ 34816893 (-) False XLOC_026584
TCONS_00051799 mRNA upstream 14761 35589212 ~ 35602233 (-) True XLOC_026589
TCONS_00051800 mRNA upstream 58322 35632773 ~ 35801146 (-) False XLOC_026590
TCONS_00051801 mRNA upstream 69035 35643486 ~ 35800221 (-) True XLOC_026590
TCONS_00051802 mRNA upstream 274941 35849392 ~ 35865040 (-) False XLOC_026591
TCONS_00051805 mRNA upstream 448817 36023268 ~ 36115354 (-) False XLOC_026592
TCONS_00051795 other downstream 617094 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051794 other downstream 751159 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051789 other downstream 789174 34767541 ~ 34775954 (-) False XLOC_026583
TCONS_00051787 other downstream 811587 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051781 other downstream 908391 34652310 ~ 34656737 (-) False XLOC_026581
TCONS_00051816 other upstream 659756 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051818 other upstream 665861 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051819 other upstream 667217 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051846 other upstream 1181582 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 1393420 36967871 ~ 36967993 (-) True XLOC_026618

Expression Profile

//