RNA id: TCONS_00004936


Basic Information

Item Value
RNA id TCONS_00004936
length 889
RNA type mRNA
GC content 0.40
exon number 4
gene id XLOC_002655
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 14936045 ~ 14940346 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGCAGAAGAGACATGGCAGCCAAAAGTGAAAAAATGGAACTAACATTTTCCCTTAGAAGAAAAGAAATGGTCCAAGAGCAGCCAATGATTGTAGAGGTTCAGGAGAGGTGGCCTGCACTCTTTTTTCAAGAACAGATCTGTGAGGAATTTTTCCGCATCACCAACAAAGACCTTCTAGGAGTCTTCATGGCAGCCACTGACAAGTACACACCAAAGCTTCTGAAATTATACAGAGCCAGAAAAGGAGCGTTTGGACATGAAATGGAAGAGCTCCTGGAAAGACTTGATGAAAGGACAACAGAAATTGTTAATCACAGAAGGACTGCTGCTTTGGAGGGCCTGCCTTTGTTTCTTCGAGAGAAACAAACTAACCTTTTCAAGAAATGTAAAGAAACTAAAGATGCAACAAAGGGCGTATCAGTTGGCATTCTCTATGTTACGGAAGATGACTCCCGGGCAGCATCACCAGTGATCCAGAACATTGCTGTTGTACTGGAAGAGGTAGTTGTTTTGGAAGACATTCCAGATACCTCAAGTGCTGTAGCATACCTCTTTGGCCTTCTTTATGCACTCAACTTTTCCTATCCCAAAGAACTCCGGTACACTTTTGACACAATTCAGAATGTTTTCATGGAGCTTGGGACTGAATGTACGCAACGTGTGCTTTCTCTTAAAAACAAGATGTTAAactaatactgtaaacagtgttgtgtCAATGGTCTGATGTTACAAAGACCTAATTTACAATTTGAGTACTAAATCTGATTCATGAGAGCCACTGTTTAGGCACTGTGTTCAGTTAAATGggtaacacttcataataactacacactatgaatcatttgttaagcattagtaAATAGTtagttcattatttgttaagtatt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140996

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006012 lncRNA downstream 1634072 13298839 ~ 13301973 (-) True XLOC_002642
TCONS_00006011 lncRNA downstream 3037470 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00004895 lncRNA downstream 3602932 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00006010 lncRNA downstream 4148396 10784334 ~ 10787649 (-) True XLOC_002626
TCONS_00006009 lncRNA downstream 4221818 10712178 ~ 10714227 (-) True XLOC_002625
TCONS_00006013 lncRNA upstream 92771 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA upstream 94737 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00004942 lncRNA upstream 144175 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00004943 lncRNA upstream 144175 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00005751 lncRNA upstream 145359 15083594 ~ 15083896 (-) True XLOC_002660
TCONS_00004932 mRNA downstream 6366 14873105 ~ 14929679 (-) False XLOC_002654
TCONS_00004930 mRNA downstream 6386 14871136 ~ 14929659 (-) False XLOC_002654
TCONS_00004929 mRNA downstream 6386 14871136 ~ 14929659 (-) False XLOC_002654
TCONS_00004931 mRNA downstream 6415 14872932 ~ 14929630 (-) False XLOC_002654
TCONS_00004935 mRNA downstream 6653 14920765 ~ 14929392 (-) True XLOC_002654
TCONS_00004938 mRNA upstream 108602 15046837 ~ 15048781 (-) False XLOC_002658
TCONS_00004939 mRNA upstream 109674 15047909 ~ 15048781 (-) True XLOC_002658
TCONS_00004940 mRNA upstream 112234 15050469 ~ 15053614 (-) False XLOC_002659
TCONS_00004941 mRNA upstream 114463 15052698 ~ 15053507 (-) True XLOC_002659
TCONS_00004944 mRNA upstream 182476 15120711 ~ 15128771 (-) True XLOC_002661
TCONS_00004928 other downstream 203646 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 447891 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004920 other downstream 1004349 13931569 ~ 13931696 (-) True XLOC_002648
TCONS_00004919 other downstream 1323797 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004918 other downstream 1328902 13607027 ~ 13607143 (-) True XLOC_002646
TCONS_00004948 other upstream 399075 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004954 other upstream 679981 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004975 other upstream 2139198 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 2166063 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 2207584 17145819 ~ 17156675 (-) True XLOC_002679

Expression Profile

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