RNA id: TCONS_00051804


Basic Information

Item Value
RNA id TCONS_00051804
length 703
lncRNA type retained_intron
GC content 0.42
exon number 4
gene id XLOC_026591
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 35849392 ~ 35865040 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACTCGGCTGAATCCGCTGGGCTTCCGTTTCAAACGTCTCGTTCGACCCCACGAACGCTATTTTAGGATGGCTCCACAAAAGCACGGCTCGGGTGGGAATGGTTTTTATGGCAACAGCGCGAGTAAAGCCGCTAATGGAGGAGCTCACGCATCGTCCGGTGTTGTGATGACTTCAGTCAAGCGACTCAAGATGGAGCAGATCCAAGCCGACCACCAACTCTTCCTGGAGGCGTTCGAGAAACCAACTCAAATATACAGATTTCTTCGCACAAGGAATCTCATAACTCCAATTTTCCTGCACCGATCTCTTACATATATGTCCCACAGAAACTCGCGAACTAATTCAAAAAGAAAGAGCTTCAGTTTGAATGATCTGCTGTTTAAAGTGGAGAAGTCAAAAGTGGATCCAGAATCTCACAAGTAAGCTGTTTTTGattcagatttattttgtttgcttaCTGTCTCAGTGCATACAGAAGTTTTAACTGCAGTCTTTTTGCTGTGCAGTTTGGCTTCAAACCTTCAACTCACTTTCACTGGATTCTTCCATAAAACTGGTGAGCTAAAATTAAGGTTTTGAGTGCAAATCATAATACTTCTGTTTAGGGCTAGGCCGATAAACGATATATCGAAttgcaataaaatttatgtccataagctctggacttttttttttttactctatattgatctaagagcaac

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031490 chromatin DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0042054 histone methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-36 Predicted to enable chromatin DNA binding activity. Predicted to contribute to histone methyltransferase activity. Predicted to act upstream of or within chromatin organization. Predicted to be part of ESC/E(Z) complex. Predicted to be active in nucleus. Is expressed in gonad; midbrain hindbrain boundary; pharyngeal arch; and visual system. Orthologous to human SUZ12 (SUZ12 polycomb repressive complex 2 subunit).

Ensembl:

ensembl_id ENSDART00000135957

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051803 lncRNA downstream 4216 35857130 ~ 35858160 (-) False XLOC_026591
TCONS_00053069 lncRNA downstream 287925 35565128 ~ 35574451 (-) True XLOC_026588
TCONS_00053068 lncRNA downstream 914315 34947402 ~ 34948061 (-) False XLOC_026585
TCONS_00051793 lncRNA downstream 1056297 34801999 ~ 34806079 (-) False XLOC_026584
TCONS_00053067 lncRNA downstream 1057658 34801999 ~ 34804718 (-) False XLOC_026584
TCONS_00051807 lncRNA upstream 229019 36093640 ~ 36115291 (-) True XLOC_026592
TCONS_00053070 lncRNA upstream 455618 36320239 ~ 36323625 (-) True XLOC_026600
TCONS_00051826 lncRNA upstream 564335 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00051827 lncRNA upstream 566324 36430945 ~ 36438351 (-) False XLOC_026603
TCONS_00051828 lncRNA upstream 574879 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051800 mRNA downstream 61230 35632773 ~ 35801146 (-) False XLOC_026590
TCONS_00051801 mRNA downstream 62155 35643486 ~ 35800221 (-) True XLOC_026590
TCONS_00051799 mRNA downstream 260143 35589212 ~ 35602233 (-) True XLOC_026589
TCONS_00051798 mRNA downstream 307567 35550870 ~ 35554809 (-) True XLOC_026587
TCONS_00051796 mRNA downstream 320995 35535121 ~ 35541381 (-) False XLOC_026586
TCONS_00051805 mRNA upstream 158647 36023268 ~ 36115354 (-) False XLOC_026592
TCONS_00051806 mRNA upstream 173861 36038482 ~ 36115339 (-) False XLOC_026592
TCONS_00051808 mRNA upstream 255161 36119782 ~ 36127234 (-) True XLOC_026593
TCONS_00051809 mRNA upstream 271909 36136530 ~ 36152974 (-) False XLOC_026594
TCONS_00051810 mRNA upstream 271943 36136564 ~ 36153591 (-) True XLOC_026594
TCONS_00051795 other downstream 914342 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051794 other downstream 1048407 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051789 other downstream 1086422 34767541 ~ 34775954 (-) False XLOC_026583
TCONS_00051787 other downstream 1108835 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051782 other downstream 1207378 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051816 other upstream 369586 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051818 other upstream 375691 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051819 other upstream 377047 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051846 other upstream 891412 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 1103250 36967871 ~ 36967993 (-) True XLOC_026618

Expression Profile

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