Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00051806 |
| length | 1002 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 6 |
| gene id | XLOC_026592 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 36023268 ~ 36115354 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051726 | regulation of cell cycle | biological_process |
| GO:0048592 | eye morphogenesis | biological_process |
| GO:0007049 | cell cycle | biological_process |
| GO:0032456 | endocytic recycling | biological_process |
| GO:0032465 | regulation of cytokinesis | biological_process |
| GO:0051301 | cell division | biological_process |
| GO:0005768 | endosome | cellular_component |
| GO:0030139 | endocytic vesicle | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0055038 | recycling endosome membrane | cellular_component |
| GO:0030496 | midbody | cellular_component |
| GO:0032154 | cleavage furrow | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040718-266 | Predicted to enable protein homodimerization activity and small GTPase binding activity. Acts upstream of or within eye morphogenesis and regulation of cell cycle. Predicted to be located in endosome. Predicted to be active in cleavage furrow; cytoplasmic vesicle; and midbody. Predicted to colocalize with centrosome. Is expressed in several structures, including immature eye; nervous system; optic primordium; otic vesicle; and pleuroperitoneal region. Orthologous to human RAB11FIP4 (RAB11 family interacting protein 4). |
| ensembl_id | ENSDART00000187406 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00051804 | lncRNA | downstream | 173861 | 35862376 ~ 35864621 (-) | True | XLOC_026591 |
| TCONS_00051803 | lncRNA | downstream | 180322 | 35857130 ~ 35858160 (-) | False | XLOC_026591 |
| TCONS_00053069 | lncRNA | downstream | 464031 | 35565128 ~ 35574451 (-) | True | XLOC_026588 |
| TCONS_00053068 | lncRNA | downstream | 1090421 | 34947402 ~ 34948061 (-) | False | XLOC_026585 |
| TCONS_00051793 | lncRNA | downstream | 1232403 | 34801999 ~ 34806079 (-) | False | XLOC_026584 |
| TCONS_00053070 | lncRNA | upstream | 204900 | 36320239 ~ 36323625 (-) | True | XLOC_026600 |
| TCONS_00051826 | lncRNA | upstream | 313617 | 36428956 ~ 36438526 (-) | False | XLOC_026603 |
| TCONS_00051827 | lncRNA | upstream | 315606 | 36430945 ~ 36438351 (-) | False | XLOC_026603 |
| TCONS_00051828 | lncRNA | upstream | 324161 | 36439500 ~ 36440687 (-) | True | XLOC_026603 |
| TCONS_00051832 | lncRNA | upstream | 336296 | 36451635 ~ 36457308 (-) | True | XLOC_026604 |
| TCONS_00051802 | mRNA | downstream | 173442 | 35849392 ~ 35865040 (-) | False | XLOC_026591 |
| TCONS_00051800 | mRNA | downstream | 237336 | 35632773 ~ 35801146 (-) | False | XLOC_026590 |
| TCONS_00051801 | mRNA | downstream | 238261 | 35643486 ~ 35800221 (-) | True | XLOC_026590 |
| TCONS_00051799 | mRNA | downstream | 436249 | 35589212 ~ 35602233 (-) | True | XLOC_026589 |
| TCONS_00051798 | mRNA | downstream | 483673 | 35550870 ~ 35554809 (-) | True | XLOC_026587 |
| TCONS_00051808 | mRNA | upstream | 4443 | 36119782 ~ 36127234 (-) | True | XLOC_026593 |
| TCONS_00051809 | mRNA | upstream | 21191 | 36136530 ~ 36152974 (-) | False | XLOC_026594 |
| TCONS_00051810 | mRNA | upstream | 21225 | 36136564 ~ 36153591 (-) | True | XLOC_026594 |
| TCONS_00051811 | mRNA | upstream | 55604 | 36170943 ~ 36171968 (-) | True | XLOC_026595 |
| TCONS_00051812 | mRNA | upstream | 57864 | 36173203 ~ 36210344 (-) | False | XLOC_026596 |
| TCONS_00051795 | other | downstream | 1090448 | 34947638 ~ 34948034 (-) | True | XLOC_026585 |
| TCONS_00051794 | other | downstream | 1224513 | 34805839 ~ 34813969 (-) | True | XLOC_026584 |
| TCONS_00051789 | other | downstream | 1262528 | 34767541 ~ 34775954 (-) | False | XLOC_026583 |
| TCONS_00051787 | other | downstream | 1284941 | 34743579 ~ 34753541 (-) | True | XLOC_026582 |
| TCONS_00051782 | other | downstream | 1383484 | 34652972 ~ 34654998 (-) | False | XLOC_026581 |
| TCONS_00051816 | other | upstream | 118868 | 36234207 ~ 36239041 (-) | False | XLOC_026597 |
| TCONS_00051818 | other | upstream | 124973 | 36240312 ~ 36246722 (-) | False | XLOC_026597 |
| TCONS_00051819 | other | upstream | 126329 | 36241668 ~ 36246795 (-) | True | XLOC_026597 |
| TCONS_00051846 | other | upstream | 640694 | 36756033 ~ 36756149 (-) | True | XLOC_026612 |
| TCONS_00051856 | other | upstream | 852532 | 36967871 ~ 36967993 (-) | True | XLOC_026618 |
