RNA id: TCONS_00051807


Basic Information

Item Value
RNA id TCONS_00051807
length 541
lncRNA type retained_intron
GC content 0.46
exon number 3
gene id XLOC_026592
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36023268 ~ 36115354 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAGCATTCATCAGCGCAGCTTCTCAACGATGGACGGCAATGTCTTCCCCGACCAAGAACAGCTGCTGGCGTTCCTGAAGAAACTCAAAGAAGTGTTCGATGTGTGCGACGAGGATGCCGACGGATATATTCGGGTTGAGCACTTCGTGGACCTCGGTTTACAGTTCGGCCAAGGAGATGAAGTGAAGAAGTTTGCCAAGTACTTGGATCCCAACGCTCACGGCAGAATAAACTTCAAAGATTTCTGTCATGGAGTGTTTGCAATCAAAGGCTGTGAGGAGATCCTAAAATCGGCACTTGGGACCCCCACCATCGCAGCACAGCCGTACCAGACAGACAATGGCTACTACTATCAGGTAGGCACAAATTGGATActtgatattgttttttttgtttctgaCATATAGCCATTGGCTCTCCAATCATCATGAGAATAGGTTTGCTCTACTGAAAACACTTTGTCTTGAACTTTGTTGAGAACGTCTTGTTTGTCTTTATTTTGCTTGCACGTCGTGAACCTAAATTGCACCTACTGGATA

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0048592 eye morphogenesis biological_process
GO:0007049 cell cycle biological_process
GO:0032456 endocytic recycling biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0051301 cell division biological_process
GO:0005768 endosome cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0005813 centrosome cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0030496 midbody cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-266 Predicted to enable protein homodimerization activity and small GTPase binding activity. Acts upstream of or within eye morphogenesis and regulation of cell cycle. Predicted to be located in endosome. Predicted to be active in cleavage furrow; cytoplasmic vesicle; and midbody. Predicted to colocalize with centrosome. Is expressed in several structures, including immature eye; nervous system; optic primordium; otic vesicle; and pleuroperitoneal region. Orthologous to human RAB11FIP4 (RAB11 family interacting protein 4).

Ensembl:

ensembl_id ENSDART00000151256

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051804 lncRNA downstream 229019 35862376 ~ 35864621 (-) True XLOC_026591
TCONS_00051803 lncRNA downstream 235480 35857130 ~ 35858160 (-) False XLOC_026591
TCONS_00053069 lncRNA downstream 519189 35565128 ~ 35574451 (-) True XLOC_026588
TCONS_00053068 lncRNA downstream 1145579 34947402 ~ 34948061 (-) False XLOC_026585
TCONS_00051793 lncRNA downstream 1287561 34801999 ~ 34806079 (-) False XLOC_026584
TCONS_00053070 lncRNA upstream 204948 36320239 ~ 36323625 (-) True XLOC_026600
TCONS_00051826 lncRNA upstream 313665 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00051827 lncRNA upstream 315654 36430945 ~ 36438351 (-) False XLOC_026603
TCONS_00051828 lncRNA upstream 324209 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051832 lncRNA upstream 336344 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00051802 mRNA downstream 228600 35849392 ~ 35865040 (-) False XLOC_026591
TCONS_00051800 mRNA downstream 292494 35632773 ~ 35801146 (-) False XLOC_026590
TCONS_00051801 mRNA downstream 293419 35643486 ~ 35800221 (-) True XLOC_026590
TCONS_00051799 mRNA downstream 491407 35589212 ~ 35602233 (-) True XLOC_026589
TCONS_00051798 mRNA downstream 538831 35550870 ~ 35554809 (-) True XLOC_026587
TCONS_00051808 mRNA upstream 4491 36119782 ~ 36127234 (-) True XLOC_026593
TCONS_00051809 mRNA upstream 21239 36136530 ~ 36152974 (-) False XLOC_026594
TCONS_00051810 mRNA upstream 21273 36136564 ~ 36153591 (-) True XLOC_026594
TCONS_00051811 mRNA upstream 55652 36170943 ~ 36171968 (-) True XLOC_026595
TCONS_00051812 mRNA upstream 57912 36173203 ~ 36210344 (-) False XLOC_026596
TCONS_00051795 other downstream 1145606 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051794 other downstream 1279671 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051789 other downstream 1317686 34767541 ~ 34775954 (-) False XLOC_026583
TCONS_00051787 other downstream 1340099 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051782 other downstream 1438642 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051816 other upstream 118916 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051818 other upstream 125021 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051819 other upstream 126377 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051846 other upstream 640742 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 852580 36967871 ~ 36967993 (-) True XLOC_026618

Expression Profile

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