RNA id: TCONS_00051812


Basic Information

Item Value
RNA id TCONS_00051812
length 3578
RNA type mRNA
GC content 0.45
exon number 9
gene id XLOC_026596
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36173203 ~ 36210344 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCTGTTGTAGCAGATACACAGAGTAAATGGTAGATACAGGGCCAGCAGAACTAGGAAGGAGTCGCTCTCAAAATCCGGCTTCATCCTTTtttaaacagagcattttcagTTCGAAACTTACCGGAGCATAAAGTTCACACTTTACTCTTTTTAACGAGCCTAATATTTTGATAGTTACCGGTTCGGAATGTTTGAAAACGACTGGTGAAAATTGGGTAGCTACTGTGAAGGGAATTAGCAAGCTAGCTGGCTGTATAAGGGGATTCTGGCTGGGAGAGACAGAAGAATAGACGGATAACAAAGACGGGATTTCCGCTGTTTTTATTGAACACTCCGAACATACATCGTTTAAATATTTCCAGCTGAAGCTAGCTTAATTGCTAGCTTTCTCGTTTAGCCATTTACCATGGAATTGAGAGTAGGAAACCGATACAGACTGGGAAGAAAAATTGGCTCTGGATCCTTTGGTGACATTTATTTGGGCACAGACATCACCACGGGGGAAGAAGTAGCCATCAAACTAGAATGTGTGAAAACGAAGCACCCGCAGCTGCACATCGAGAGCAAGATCTACAAGATGATGCAAGGAGGCGTTGGCATCCCAACAATCAAATGGTGTGGAGCAGAGGGAGATTACAACGTGATGGTTATGGAGCTTCTCGGTCCCAGTTTGGAGGATCTCTTCAATTTTTGTTCGCGCAAGTTCAGCCTAAAGACTGTTCTTCTGTTGGCTGACCAGATGatCAGCCGTATTGAATACATTCACTCTAAGAACTTCATCCACAGAGATGTCAAGCCTGATAACTTCCTTATGGGCCTTGGGAAGAAGGGCAACCTTGTTTACATCATTGACTTTGGCCTGGCCAAGAAGTACAGAGATGCTCGCACCCACCAGCACATCCCTTACCGCGAGAATAAAAACCTGACCGGCACTGCTCGCTACGCTTCCATCAACACCCACTTGGGAATAGAGCAGTCCAGACGAGATGACTTGGAGTCTCTTGGCTATGTGCTCATGTACTTCAACCTGGGCTCTCTGCCATGGCAGGGTTTGAAAGCTGCCACAAAGAGACAGAAGTACGAGCGAATCAGCGAGAAGAAAATGTCCACTCCTATTGAAGTCCTTTGCAAGGGATACCCATCTGAGTTTGCCACATACCTCAACTTTTGCCGCTCCCTTCGTTTTGACGACAAGCCGGACTACTCTTACCTGAGACAACTTTTCAGAAATCTTTTTCACCGGCAAGGCTTTTCATATGATTACGTGTTTGACTGGAATATGCTCAAATTTGGCGGAGCCAGAGAAGATCCAGAGAGAGATCGGAGGGATCGCGAGGAAAGGATACGGCAAGGGCGAATTCCTCTTCCCCGTGTCATGCTGCCCACAAGCTCAGGTAGACCCAGAGGAACACAAGAAGTAGCACCTGCCCCACCCCTCACGCCAGACTCACACACAGGAATGGAGCGAGAGAGGAAGGTCAGTATGAGATTGCACCGTGGAGCCCCTGTCAACGTTTCCTCCTCTGATCTTACTGGCCGACAGGACTGCTCCCGCATATCCACATCACAGGCTCATTCTCGCGTCCCAAGTGGCCTGCAGTCTGCCGTACCTCGATGAGACCCTCCACACGCCTCAAGAGCAGACCATCCACGGCCCTGATCTGCACAAGGACTCCTCCAGCAGCCTCTAACCATGTGAAATCAAATCCAAGCAGACACTTCATTTCCTCCTTCCTCTCAATGCAATTAAACAACACTTGAGAGTCACGCAAAACTCCAGAGATGGACTGTTTTTGGTTTTCTGTTCTTCTTTTtagcacgcacacacatgcacgcacacatttCCTCACCTACACTACTCAAAAAAAGACACCCGGGCACATCACTTTCTGCCAGTCAATCGCTGACAAGATGGGAGGGACAGGACAGGGTGTCATTTTCGGCCGACGCTGCCTTTGgccctctgaaacacacacatattatagGAGGAGAGGACCGTTCTCCTGCCGTCCAGGGGCTGTTCACAAAAGCAGAGTGTTTTGGCTAAAGCCTGCTCTGATTGCGCAGCGTATCCTCTCTCTTGTTGCAAAAAAATACTTTCACACAGCTTGGAATGCAGCTGTACTGATAGCCATTGACATTTTGCTTTGcgtaacttttttttcttcttgtcttTAAGTTGATGTACATCAGAGATTAAATTGATTTCACACTGGCTACAGTCTTTTGCAGGTGAATCTTCTCCTTTTTTATGTTAGTTTAAGCTGAACATGCAGAATTAAATGGAAAGCCTGTTCGTTCGTGAGGCAGAATGACGGCGGTGTCTTATGTCTTTTCGTAGTTTATTATTTTGAAGTCCAGGCAGAAAAACAACACAGCAAATGGTTTTAGTCGTACACACAGTATCACCTTTGTTTTCTTTTGGCAGCAAACAGCCAGGCCCTCTCTATATCATCTCGCTTCTAGATTTTATTGCATTCCCTTTATGCGTTTTTGTTTGTCAAAAGCTGTGAGATGCCTGTATTGTAGAGTTGTTGATGTTATTAATgtcgtttcttttttttaaccccTGAACTAAGCTTTTACAGTAACGCAGGCACACGGGGTTGAGTCCATGCTGTTGGATGGTGTTGTTTAAAGCAGTTGCGGAAGTCTAATAATGATGAAAAGGGCTTTGTTTTTCTGGCCTGAGGGTGTAAGCGTGAAAGACTCGGGCATGTTGAGACAAACTGGCACCTTTTTCTCTCTTATTTCCTTTTTGTTACgcaaacaaatgtttgtttggaTTTGGAAGTCCAGCTTGTCTCATTGAGAGAACACCAGCCATCATTTAAGCCATGCCTGattttggattattttttttgtctgacaCTTTTAACTATTGAGATGCaaggtatttttgtttgtttgtttgttcgttttccTTTAACTTTATTTACCAATGCTTTTAGTACAACTTTTCCCTTGTTTCAGAAGTGGGGTTCTTTGACTTACTGGTGCTATAAGTCACAGAGGATGTGGACGGCGAGCTGCCTGTCCATATCATTCAGCATAGTAGAGCGTAGGCTTTTTCTGTAGTCATGGGGGTCTGGGGCGGGGGGGGATCTAGTGGTGAAAATCTTCAATTCTGTTGTCATGTATATAGAATGTTTCTAGTGATGGCAAAGTACCATTTTTTCATAGCcacttgtctgtgtgtgtgtgtgtgtatcgtgAGTATGGGAAAAAGGTTAGAGCTTAGAGAGGTGCGAGGGACTTTGTTCCGTTCTAGATTTGATAAGTTAGTACTTCTTTCTCTCCACTGGTGGTCTCACAGAAACAGCCGCTCCAGTACTGGTGGTGTTTAAATGTAGGCACAAGTACACTTTGTCGGGGATCGAGCTATTATGGATTTCTCTTTCATTTTTCTGGTTCATTCTACACGCGACTGCTTGGCCAGTCCTTCTGCATCACACTGTGCTGTATCAGGTGGAATTAAGGAAATCTTCCTTCTCTGGAAGATTTTATTTCCTCATTTGTATTGCcactgtatttgtgtattttaaaatgtgtaaataaattaataagtactTGTAA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:1905515 non-motile cilium assembly biological_process
GO:0042752 regulation of circadian rhythm biological_process
GO:0051225 spindle assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005876 spindle microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-825 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including organelle assembly; positive regulation of canonical Wnt signaling pathway; and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within Wnt signaling pathway and protein phosphorylation. Predicted to be active in cytoplasm; nucleus; and spindle microtubule. Is expressed in several structures, including brain; head; pectoral fin; post-vent region; and tail bud. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome 2. Orthologous to human CSNK1D (casein kinase 1 delta).

Ensembl:

ensembl_id ENSDART00000025326

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051807 lncRNA downstream 57912 36093640 ~ 36115291 (-) True XLOC_026592
TCONS_00051804 lncRNA downstream 308582 35862376 ~ 35864621 (-) True XLOC_026591
TCONS_00051803 lncRNA downstream 315043 35857130 ~ 35858160 (-) False XLOC_026591
TCONS_00053069 lncRNA downstream 598752 35565128 ~ 35574451 (-) True XLOC_026588
TCONS_00053068 lncRNA downstream 1225142 34947402 ~ 34948061 (-) False XLOC_026585
TCONS_00053070 lncRNA upstream 109895 36320239 ~ 36323625 (-) True XLOC_026600
TCONS_00051826 lncRNA upstream 218612 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00051827 lncRNA upstream 220601 36430945 ~ 36438351 (-) False XLOC_026603
TCONS_00051828 lncRNA upstream 229156 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051832 lncRNA upstream 241291 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00051811 mRNA downstream 1235 36170943 ~ 36171968 (-) True XLOC_026595
TCONS_00051810 mRNA downstream 19612 36136564 ~ 36153591 (-) True XLOC_026594
TCONS_00051809 mRNA downstream 20229 36136530 ~ 36152974 (-) False XLOC_026594
TCONS_00051808 mRNA downstream 45969 36119782 ~ 36127234 (-) True XLOC_026593
TCONS_00051805 mRNA downstream 57849 36023268 ~ 36115354 (-) False XLOC_026592
TCONS_00051814 mRNA upstream 23716 36234060 ~ 36246899 (-) False XLOC_026597
TCONS_00051815 mRNA upstream 23722 36234066 ~ 36246975 (-) False XLOC_026597
TCONS_00051817 mRNA upstream 24058 36234402 ~ 36246975 (-) False XLOC_026597
TCONS_00051820 mRNA upstream 38507 36248851 ~ 36260102 (-) True XLOC_026598
TCONS_00051821 mRNA upstream 52249 36262593 ~ 36272670 (-) True XLOC_026599
TCONS_00051795 other downstream 1225169 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051794 other downstream 1359234 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051789 other downstream 1397249 34767541 ~ 34775954 (-) False XLOC_026583
TCONS_00051787 other downstream 1419662 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051782 other downstream 1518205 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051816 other upstream 23863 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051818 other upstream 29968 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051819 other upstream 31324 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051846 other upstream 545689 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 757527 36967871 ~ 36967993 (-) True XLOC_026618

Expression Profile

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