RNA id: TU2093356


Basic Information

Item Value
RNA id TU2093356
length 488
RNA type TUCP
GC content 0.51
exon number 5
gene id LOC110512783
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 9406037 ~ 9611812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATACACTGCAGGAAACAACCCCggagaaacacacagagCAGGAGATGGTAGAGGTCCCCATGGAGGAAGAGGACGTTGACCCTAAAGACAAGCGTCCTGTAGCTTCCACCCCTGTTCCCGGATCTCCATGGTGTGTGGTGTGGACGGGGGACGACAGAGTATTTTTCTTCAACCCAACGATACAGCTCTCTGTTTGGGATCAGCCGGTAGATCTGAAGGACCGTGGAGAGGATCTCAACAGGATTATAGAAGATCCTCCACATAAACGCAAAAAGGATTCTTTGTCCACAGAGGATGGTTCTAACTCTCCGTCTGCCGATGACGATGATGCTGATGATGAAGATGAACATTATTCAAAAACCAAGAGGAACAAACTGGAGGAACCTGCGGATGGTAATGAGGACCTGAGAGAGAGGGCAGGCGCAGAGACATGTGACTCTCCCCCTCATCGGACTGTTCTACCCATAGGGCTCCGCATCACACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2093349 lncRNA downstream 25719 9387882 ~ 9388226 (-) True G1827621
TU2093345 lncRNA downstream 31739 9381355 ~ 9382206 (-) True G1827617
TU2093337 lncRNA downstream 38340 9373933 ~ 9375605 (-) False G1827614
TU2093338 lncRNA downstream 38340 9373933 ~ 9375605 (-) True G1827614
TU2093339 lncRNA downstream 39655 9373652 ~ 9374290 (-) False G1827614
TU2093367 lncRNA upstream 3320 9428801 ~ 9429125 (-) True G1827639
TU2093376 lncRNA upstream 14632 9440113 ~ 9442881 (-) True G1827645
TU2093380 lncRNA upstream 23221 9448702 ~ 9449157 (-) True G1827649
TU2093327 lncRNA upstream 33013 9458494 ~ 9459584 (-) True G1827611
TU2093386 lncRNA upstream 40014 9465495 ~ 9465745 (-) True G1827655
XM_036960050.1 mRNA downstream 204609 9180730 ~ 9209336 (-) False LOC110532938
XM_036960049.1 mRNA downstream 204863 9179686 ~ 9209082 (-) False LOC110532938
XM_036960143.1 mRNA downstream 280089 9049200 ~ 9133856 (-) False jakmip3
XM_036960126.1 mRNA upstream 456562 9882043 ~ 9914708 (-) False LOC110531428
XM_036960128.1 mRNA upstream 456568 9882049 ~ 9914606 (-) True LOC110531428
XM_036960055.1 mRNA upstream 714616 10140097 ~ 10152267 (-) False LOC110502268
XM_036960056.1 mRNA upstream 714616 10140097 ~ 10153605 (-) False LOC110502268
XM_021580170.2 mRNA upstream 714616 10140097 ~ 10154288 (-) False LOC110502268
TU2092973 other downstream 254330 9159197 ~ 9159615 (-) True G1827339
TU2092832 other downstream 280120 9112557 ~ 9133825 (-) False jakmip3
TU2092833 other downstream 280120 9112595 ~ 9133825 (-) True jakmip3
TU2092820 other downstream 466813 8843615 ~ 8947132 (-) False G1827228
TU2093387 other upstream 40589 9466070 ~ 9466490 (-) True G1827656
TU2093423 other upstream 118902 9544383 ~ 9544973 (-) True G1827690
TU2093499 other upstream 262976 9688457 ~ 9688844 (-) True G1827761
TU2095319 other upstream 1777586 11203067 ~ 11203996 (-) True G1829417
TU2095870 other upstream 2307949 11733430 ~ 11733926 (-) True G1829918

Expression Profile