RNA id: XM_036959703.1


Basic Information

Item Value
RNA id XM_036959703.1
length 10543
RNA type mRNA
GC content 0.45
exon number 21
gene id LOC110502266
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 10160479 ~ 10206199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCATGCTCTTTGGTGTAGCCGAATAGATGGGACCATGAGCGCCAGACCTGCAACAGACCTTCTGTTAGCTTGGAACCCAGTGTGCTTGGGCCTGGTTGAGGGTCTCATCGGGAAAATACAACTTCATACAGGCCTGTTGCCCTAGCGACTTCACACAGACACAGCCTGTACATACACATGCTGCTACAGAGCCAATCTTCCTCTGGGTCTCATACTGATCCGCCAAAAAGCGCTGGTTGGCCAGATGCCAGGTGACCACAAAGTCTACAAGATCACCAAGATAGCTGTCATTCCTCTGTCTGAGGAAGAGCCAGTGGATCTGGAGCTGGAGCTTTGTAAGAAGCATCACTTTGGGATCGACAAGCCAGAGAAGCTTGCACCGTCTCCAGATGAGTCGAAGTACCTGATGAAAACTCTGAGTCAGATCAAGTCCAATGTTGGGGCTCCCACTAAGAAAAAGTATTCCCCTGCCTTTCAGGTTAAGGAAAACAAAGAGAAGGAACGTCTCGAGAGGCGGTTGCTCGACGAGCTGTACAAGATATTCATGGACTCCGATTCCTTCTACTACAGCATGACTTATGACCTCACCAACACTGTGCAGCGGCAGGGAGACACAGAAAAGTCCAACTTACCCCAATGGAAACAGGTGGATGACAGATTCTTCTGGAACAAACACATGGTCCAGGAGCTAATTGATCTGCAGGTTCCAGAGGTGGACTTCTGGGTGACACCCATCattcagggctttgtgcaggtgCAGGAGCTGGTAGTGAATTACAACGAGAGcccagaggaggagaagagcagCCCCGATACGCCGCTCCAGGAGCTCACCTGCGTGGACGACATCCACCCGCGCTTCACCGTGGCCCTCATCTCCCGCCGCAGTCGCCACCGTGCAGGGATGCGGTACAAACGCAGAGGGGTAGACACAGATGGACACGTGGCTAACTTTGTGGAGACCGAGCAGCTGATACACGTGCACAACCACTCACTGTCCTTTGTGCAGAGCCGCGGTTCGGTGCCTGTCTTCTGGAGCCAAGCAGGCTACCGCTACAACCCCAGGCCTCGGCTGGAGAAAGGAGAAAAGGAGACCATTCCTTACTTTGCGGCTCACTTTGACGAGCAGCTCAACCTTTACAAGAAGCAGGTCATCATAAACTTAGTGGACCAAAGTGGGCGTGAGAAGATTATTGTCGACGCATATCTCAAACAAGTCCTTCTGTACAACAATCCTAACCTTACATATGTCTCTTTTGACTTCCATGAGCACTGTCGAGGTATGAAGTTTGAGAATGTGCAAACGCTGACAGATGCCATCTCTGATATTATCGCAGACATGAGATGGGGCTGGGTGGACCAGGCAGGAGTCATCTGCCATCAGGAGGGCATTTTCCGGGTCAACTGCATGGACTGTCTGGACAGGACCAATGTAGTCCAGGCTGCCATAGCTCGTGCAGTAATGGAGGCACAGCTGAAGAAACTAGGTGTGATGCCCCCTGAGCAGCCTCTGCCGCTCAAGTGCTACAGGATCTACCAGGTCATGTGGGCCAACAACGGCGACACCATCAGCAGACAGTACGCCGGCACAGCCGCCCTCAAGGGAGACTTCACCAGAACGGGGGAGAGAAAACTGGCCGGGGTGATGAAAGATGGCGTGAACTCAGCCAACCGCTACTATCTGAACCGCTTCAGGGACGCATACAGACAAGCAGTCATTGacctgaTGATGGGCCATCCTGTGACAGAGGACCTGTACTCCATTTTCAGTAAGGAGAAGGAGCATGAGGAGAAGGAGCAGGAGAGCCAGAGAGTAACCCAGGAGCAGGTCAGCCTCCTGCTACAGACTTACATGCAGCTACTGCTGCCCGACGACGAGAAGTTCCATGGTGGCTGGGCACTCATCGACTGTGACATGAGCCTTATTGACGCAACCAGCAAAGACGTGGATGTTCTCCTGCTGTTATCCAACAGTGCATATTACATTGCATACTATGATGAGGAAGCTGACAAAGTCAATCAGTACCAGCGCCTCAACTTGGAGGGTTTGGAAAAGATTGAAATAGGCCCAGAACCTACTCTGTTCGGGAAGCCCAAATTCTGCTGTATGCGTCTACACTACAAGAATGAGGAGACAAGTGGGTATTTTCACACACTGAGGGCTGTCACAAGGAATCCTGAGGATGACGGTAAAGACACGTTACAGTGCATAGCTGAGATGCTTTGCATAACAAAGCAAGCCATGGGACTTGACATGCAGGTGATTGAAAAGAAACTGGAGAGAAGGCACAGTAAACCTCACGAGGACATCATGGGCAGACACCCTGACCAGGTCCTTGGCAGCTCTGGTCTGGCTCAGGGAAAGAGCTTCCTCCTCAACAAGTTCTCCTCTCTCAACCAGAGGGTGAAGAAGTCCAATGTCAACATGGGCTCCTTCAAGGGGAGGCTGGGCAACACCTTCTCCACTAAGCCCGACGTGAACTTCCTGAAGCCCACCATTGGGATCACCCTCTGGAAGTCTGACAGCAGCTTGGAGACCTCCGAGGGGGCAAACACCGGCCCGGCTCTGAAGGACCTCTGTGACAACCACTCAGAGATGTCGTCCGACTCAGATTCGTACAACTCGGATGAACACCTGCGCGCCGGCTCCTTGGAAAATGTGGACTATGTGCTGCCCAGCTGCGGCATCGTGGCATCAGCTCCTCGGCTAGGCAGCGTGGAGCTTAACATCAGAGTCACTGGCAGTGACAGTAAACAGGGGGCTCCGGCTCTAGCCGGTCCTGAAGACCAGTCTCCCGACGCTACCTCAGAGGGTGAGGAGGCCATCCTGATAGACTTTGGAACGCCCATTGATGCCTATTGCCACCAATTCATCCAAGATGCGCAGACCAAACCTGTGGAGGTATTCGGGGAGCAGATGACTGGTGGCGTCCCAACACAGAACCCACATGTCCCTTCACATGCTAAAGGTCCCCTGGCCCCAGACGAGCACCCAGGTTCAGATCAGAAGATGCAGGCGAAAGAGCTCCAGCTCCCTTCCAGGCCATCCCAGCTAGATGTTACCTCCAGACCCAATCTCCTGACTGCCCAGAAGCTCAGCTCGGCAGCTTCTGGCAGCTCCCAGAGGAGCCTGGGCTCTCACATGGAGGGCAGCCTGGGCCCCTTGCCCGCCGACGGCAACAGCAGCCGAGTGGTTTCCCCCTTTGCCAAGATCAAGAGCTCAATGGTGCAGGTGGCCAGCCTGACCCAGGCCGGACTTACCCAAGGCATCAACTTTGCCGTGGCAAAGGTGCAGAAAAGCCCAGAGCCAGAAATGGGCGGTCTCAATGAGACACAAGAGAAAGAGCTGAAGGCAATGTTTACACAGTGCCAGACAAGGATCATACAGATCTAGCACTTCTAAAGTTGTAGCCTCTAAGCAGGTTTTTGTACAGTTAGTAGTATAGTATGTGACTTCCAGTACAGTAGCTAGCAGTAGCATAAGCTTGCACAAGAAGGGACCCACACTGACTTGACTAAGAACCCTGCTCTTCAATTCCCCTTGTAGTTGACCTGACCATGTTTACAGCCAGTGTTGTGTAGTATATAATACCCCAGCTCAATACACGGCGTACTTAATCCTAATGCAATTCCTTTCCGACTACCGCAAAGCATTATATTCTGCCAATATGAACTAATTGAACTAACCATAGCCTAAAGAAAATGATTTAATGAAAAGCAGCAAACAGACAACATTCTTTAATAAGACTCAAACAGAAAAAGGCAATAGCTACACCTCGTTTCAATTTCCCACCCAAATACAGGGAAACTCTACATATTTCAATGTGTTGAGTGCGCAAGTGGGTCTGTACTCTGTACGCAGCGTAGTACCTTCGTTGACGTGTTTTGCTCGACAAAGACTGAAGCATTCCTTTCAATTGATTTTCCAGCTACATTTGCATGTCAGGCTATTGTTGATAACTGAATTAGATAAGGTAGGCAATATCCAGTGCATGTTGAGAGATGAGCTCTGAATTGATTACTTTTGTGATTCCATAGGTGCAGTGCACCTATTGGCGTTTATGATATAGGCCTAGTTCATAGCTCTGTTTCAAAAACATTAGTAGAAGTATCCGACCAAATGTCCCTATTGATTTTCAAAGGGCAGCTCAATGTTAGATATTAGACCTACCCTAGGCTAGTAAGAAAACAAACATACAACTCCTAGATAAATGGGGATCAGTAGCTCGGTTTCCATcaaattggtgacagattttcatgcaaatattcaaaAATCTGCATTAAAAACAATATTctcattttcccaccagagatgtttccatcaaattgacttgtgcATGAtaacgtagtgcacataaaaattaCTTTTGCGGTTACATTCCTGTTCCGAAAAAAACTAAACTAAATTGGTTTCCATCGCATTTAACtctgttttgtcacaaaacaaatTGTTATACAGTGGGGTCAGAAATTATTGACAACTTTAATAAAGATGAGCAATGACTGTGAAATAATTAAAATACTGaactatattgtatgctcaattttttgggggggaaattaTATTAATACAATTACTCAGAAAATAGATTGTTTAAACAAGTAATATAAAAAGATCTAAAGAAGGTGGGGTTCAAAATTGACTCCACTAAAGATTCTTGTAAATAAAGTAgtcaagtttagtatttggtcccatattattaatggtaaataatgtattgtgttattttggagtcacttttgtaaataagaatggaatatgtttctaaacaccacTTGATACCATGATTACAGCTAATCCTGAAATGAATCTTGAGTGAGAAAGTTTGACCTAAGATCATACCCCCCCAACAAGTTTGAGTCACACGCTTAATGttgtcattgcgtgctaggaatatgggaccaaatagaaacacttttgactactttatctTTACGGATGACAATGATGACCCCTAACtttgagattttttttaatgacttgttaaacaaaatctcgttctctgagaaattgtattagtataaaataattgcATTCATTATTGCTCATATTTATCAAGGTTGTCAATAATTTTGGACCCCACTGTAACCTATGTGCCCACACTGGTCTTTGCACGTGCTCTCTAGCCAAAAGCTTGCAGATAGTGCAGGTAGGCTACCAACATGATGAATTTcctattatggacaaaagagcaagattatttttacttgtcaaacggcagccaagcatcgatcatcatgtcaccataATAAGACTCTCGATATTTATTTGAAAACAGCATTAAGCTTATCACCGTGCACTTTCTCCATCCTCATAACTTATTCCATCTGTAGCATAATACACTCCATGCTTTTCCGAGTTGTAGTGGGTGGACCACACATGTCATTGTGTGACTCCAagttcgatatgatggttattatatcaatatttgcgtataattaattttactgacacaaaaagatcccaccttgtctagcagATTCTGTcgtgaattattttatttttctatcCCACATGTACTTTACTCTCATAAAAAAGTTAGTTGGAAACCTGGTTATTGTTGTCGAGTTTATTCCCCATCAATATAGGACATTTAGCAACGTACAAGAATTCCGGTAAGAGTATATACTGTTTGATATGTAagtattgtactgtatgtatatctgTTCCCTAAGTTATAACCTTTTCATTGACCAACAAGTATTTATGGACATATAACTATATCTCCGTACACTTTGGCTTTTGATCATGTTGATGCTAGAGTTAGATGCACTGCTGCTGAACATTTCCGAAGGGGTTTGAGCATACCCAAAAGTCACTATTAACTGACAGCTTACCAAAATCATTTGAGATTCTGTAAGCATTGGTGGATTGATAGGATTTAATTGAGTTTTCATACAAATGGTTGTATGCATTAGGTCTATGAGCCCTAAGTCCGTCACATGTTCGACAAATACTGTACAGTAGCATATAGAATATATGCAATGTGGTCCGTCCAAAGCTTATTAAAAACACACTTCGATGCTTTATGCACTCCTGAATCTAAAGTGTAAGCCTTAAAAGGACATGAAAGTGGGAGATTGTATCAGGTATTTATGGCAAATCTACCTTTAGAGTTAAGTTTATTCCATCATGATGTTGCATAATTGGTTTGATCTTGGTACTGTATATTAGATCATGTTCAGGGTAATGTCAGCTTTGTCTTGGGATATTCCGTCCTCTGGCCTATGTTTTTAAATGGTGTTCAATGCTCAGGACATGAGCTCCATTGCTGtgttttcaactttgtggcaacagtttggggaaggtcaatacagaaatggtttgttgagattggtgtggaagaacttgactccatattaatgataatgattttggaatgagatgttcaatgagcaggtgtccacattggCCACGTCgtgtataaacgcaacatgtaataatttcaaatattttaatgagttacagttgttataaggaaatcagtccaattgaaatatattcattaaggccctaatctatggatttcaaatgggaatacagatatggatcagaaaaccaagaAACTGTCCTCGGAATTGTGGATGCCGAATGATTTCCTAGTAGCCTGCTGATATTGTTTGGCACTGCCAAAGCTTTAATATGACATCCTCAATGCAATAGGAATATAAGGCTTTAAGCAGGGCTACGGGTTGTATTTCATGTTGTATTTAAGAATGCATGCACTACACTGGAGCAGTTAAATCGGAGCAGAAACCGTTCTTACCTGAATTAAATACCGATTTGTAAAACATGATTATTTTATAGTGTAAACACTCCTTTCATATGGAGTTTTAATGTTAGGAGGGGGTATAGTCCTTACATTTGCCAGatgggagtttttttttttttttttttttacactaagTGCTTTTGAAACAACCTTTTATTTGTCATCAATGGCTGATGTCACTTGCCAGATATGTACCAGTAAGGATTCTGCCCATAGACAAAGTACAGTTCTATTTCAAATATATTGTTTCGATATCTCACAATGGCCGTTGTCTTAGATGGATTCTCTAATGGAAGAACCAATCACAGCAGAGCTATTGAGCCTACTGCTACGCAAAACCCCCAGCTACGCAGCAGGCTGTCAACCGACATTTCGGCCTTTCCCAGAGGCCGACAGTGGGGGAAGCGTTCGATCGCTGCGACTGCATCGAGGTCCCGCCCAACTGGAGGGGCGTCTGACCTAGGGGTACGTGCCCGGCGGTAGATGCAGCCAACAGATCACTATGGGGCAGAGGCACATCTCTACTCCTAAAACCCCACCACTCGTGCAGCAGTGCTCTTCTATGCATCTGCTCACAGGGACCGCCACTGGTGAGCAAGAGTCATCTGACTTGTGAGCAACTCGCTGCAGGAAACTGGCGAGCATGTGCAGTCAATGCCCGCCCTATTCTGGATCTACGGATCCTCAACAGATTTCTGAGAAAGTCCATATTCTGTATGCTTACGCTCAACGTGCTGTCTCGCTCTGTTAAGGTCGACTGGTTCATTTCAGTAGAGACCGTAAGAGAAAGACAGATTGGAGAGCTGTTTGTACCAGATTCGAACCCACGCCAGCGGCCCTAACTGCTAGGCTGTCGCAGGACGCTTATTTTCACATAAGTATTCTGCCGACACACAGGAGGTTTCTCAGGTTCGCCTTTCAAGGCAAAGCTTCCGAATACCTCGCTGTTCTCTTCGGGCTAGCGTTGGCTCCCTGAACGTTCAAGTGTGTAGAGGCGGCGCTAGCACCCCAGAGGGGTTAAAAGTATCCTCTTACATAGACCATTACCTGCTTTGCTCCCCTACACAGAAGCAAGCGGTACTAGACATGGCTTCTCTTGTATGCACTCTTGTAAACACTTCACCGAGCTAGGGTTCAAGGTCAACCAGAAAAAGAGCTGTTTGGTGCCCACTCAGAGAATAGAATACCTTGGCGTCAAGCTGGATTCTCTCTTATCGGGCTACACTATTGGACAGCCACGCTCAAAACATGTCTCAGAGTTCTTGGGTTGATGGCGTCCACCTCAGTAGTACCACTAGGACTACTGAGAATGACACTTCCAGAGTTGGGTAAAAATTGTCAACGTTGGCACCTCAATCGAAAGATGAAGGTTTCCACGGACTGTCTCAGCTCTTCGTCACTGGAAGATCCCCTCAATCTTCTTTTCAGGCACCCCCTTAGGGGTAGTGTCATCGAGGAAGGAGGTGACGACAGATGCATCAGTCAAAGGATGGGGCGCAGTTCACGAGGGAAGAGCAATAAACAGACTGCGATCCCCACAGCTCCGCCACGCTCGTAAAGGACCTCAAACTGCTGAGTGTTTCATTTGAAATTGTCACATCCTGGTCAGAACAGACAATATTACTGGAGGCATACATCAACCACCAGGATGGCACTTTCTCGCTGCGCTTACACAGACTGCCAAGAGTATTCTGTGGAGCAGTGCACATCTCTCATTATGCGTGACTCATGTCCCGGGTGTACTGAATGTGGGAGCAGACTTGTTGTCCAGGGGGAAtcccagatctggggaagagttaCCGTAGATCGCTTCACAGAAAGACACGTTGTCCCTTGGCCAAGAGTGTTGCTCTATGCTTGATCCTCCCCTCTCTGAACAGAGTGAGGGAACAAGGCTTATCCCTGATCTTGATAGCCCCTCGATGGCCAGGAAAGCTCTGGGTAGCAAAGCTCACTTTACGACGAGCCCTGGCAGCTACCATTACGCAAGGGATCTACTGACCCAAGCGAACAGAGAGATTTTCCACCCTTACCCGGAAACCATGACCCTCACTGTATGTGAACAAGTGGTGCGTATTTGAGAGGTGGTGTGACCAGAAACAGAATTCCTTACCAATGCTCTGTATCCAAGGTTTTATGCTTCTTGCAGGATTTTAGACGGAGGGGAGGCATTCTCCACTGTTAAGGTTTATTTAGCCGTCATATCTGCCTGTCGTATAGACTTCAACAATCACACAGTAGGGAAACGCCCTCTTATGTTTTATGAAGAGAGTGCGTCGTTTACGCCGTCGCCAAGCCTTTAACTCAGTCTTGGTACTTTGCTTGAGGCAATTTCCCAGCAGTTGCTGGAAAGTGTGGAGATGAAATATCTCTGCCCAAAACGAGTGAGTGAGTTGCATGCActgtcagttttttttttttttttttttttaaccaggtaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcggctcgggggtttgaacttgcaaccttccggttactagtccaacgctctaaccactaggctaccctgctgccccagttCAACATTCATGCCTACAGTTTGCCCCAGGGTTATCCAAGGTAACACTGTAACTCAACCCTGCTTTCATGCCTAAGGTCAGCGGCAATTACAATTGTCTAGTCTTGGAGTTTATGGCTTTCCACCCGCCGCCCTTCACTTCTATGGAAGAAGAGCATCTCCACCGTTTGTGTCCAGTACGAGCTTTGAACATCTAttctgaacagaaatataaagcGCAACATGCTAAAAAAAATGTTGAGTTaaagttcataaggaaatcagtccatttaaataaatgaactatgccctaatctattgattttacatgactgggcaggggtgcagccattggtgggcctgggagggcatagacctcatgctgtttaatcagcttcttgatatgccacacctgtcaggtggatggattatcttggctaaggagaaatgctcactaactgggatgtaaacaaatgtgtacaATTTTAAATGaagaagctttttgtgcgtattgaatgtttatgggatcttttatttcagctcatgaaaccaacactttatatggtgcatttatatttttgttcagtatacttggATAGAACGAGAGCATGGTAAGAGTGACCAACTCTCCATCTCCTAGGTGTCCCCCCTGCAAGAGGGCCCCTCTCTTGTCAACGACTATCCCATAGTGGAGGCTATTAAAATAGCAAGGGTTTGCAGCCCCCTGGGGGCTTGAAGGCTCATCCCACTAGCTCTTTGGCACTGATTAAGGGCATTTGTTTGCAATACTGCACGTTGGGCCACCCCTCATACATTTGAGGTTTTAACAGCTGGATGTTTCTGCTCCTTCGTTTGTGCCTCAGGGGTGATATTGTTGGGACTAGTCTGGCTTCGGAGAGCAAGTGGGCAATCTATATCCCCATTGTGAGAAAGTGAAGCGATATATTTGAAATAGAACTTGGGGTTACTTACGTAACCGAGATTACGAAGTTACATTTACAACATTGTGAGTGACTAGACTAAACACGATTGCACTGCATTTAAACACATTTTCCAGCGATAATCCCATGTCTGAATGTCTGTGGTTGTACTTCACCTCTCAAACAACTGACTTGTCATTTTTTTATGTTGTACTCAAATTTGATTGaatattaaaatatatttctTATTTCTACCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2093881 lncRNA downstream 21951 10137818 ~ 10138528 (-) True G1828083
TU2093864 lncRNA downstream 33999 10112241 ~ 10126480 (-) True G1828066
TU2093849 lncRNA downstream 98954 10040751 ~ 10061525 (-) True G1828052
TU2093842 lncRNA downstream 108318 10014324 ~ 10052161 (-) True G1828046
TU2094181 lncRNA upstream 167872 10373745 ~ 10374676 (-) True G1828357
TU2094189 lncRNA upstream 181723 10387596 ~ 10387927 (-) True G1828365
TU2094394 lncRNA upstream 237196 10443069 ~ 10443358 (-) True G1828561
TU2094395 lncRNA upstream 237731 10443604 ~ 10444469 (-) True G1828562
TU2094396 lncRNA upstream 238900 10444773 ~ 10444993 (-) True G1828563
XM_021580171.2 mRNA downstream 6190 10140097 ~ 10154289 (-) True LOC110502268
XM_021580170.2 mRNA downstream 6191 10140097 ~ 10154288 (-) False LOC110502268
XM_036960056.1 mRNA downstream 6874 10140097 ~ 10153605 (-) False LOC110502268
XM_036960055.1 mRNA downstream 8212 10140097 ~ 10152267 (-) False LOC110502268
XM_036960126.1 mRNA downstream 245771 9882043 ~ 9914708 (-) False LOC110531428
XM_021580166.2 mRNA upstream 3628 10209501 ~ 10216489 (-) True LOC110502265
XM_036959987.1 mRNA upstream 56193 10262066 ~ 10308838 (-) False LOC110502263
XM_036959989.1 mRNA upstream 56193 10262066 ~ 10308838 (-) False LOC110502263
XM_036959990.1 mRNA upstream 58418 10264291 ~ 10308838 (-) True LOC110502263
XM_021580163.2 mRNA upstream 104903 10310776 ~ 10328183 (-) True LOC110502262
TU2093499 other downstream 471635 9688457 ~ 9688844 (-) True G1827761
TU2093423 other downstream 615506 9544383 ~ 9544973 (-) True G1827690
TU2093387 other downstream 693989 9466070 ~ 9466490 (-) True G1827656
TU2093356 other downstream 734998 9413945 ~ 9425481 (-) True LOC110512783
TU2092973 other downstream 1000864 9159197 ~ 9159615 (-) True G1827339
TU2095319 other upstream 997194 11203067 ~ 11203996 (-) True G1829417
TU2095870 other upstream 1527557 11733430 ~ 11733926 (-) True G1829918
TU2095938 other upstream 1594810 11800683 ~ 11803131 (-) False LOC118943913
TU2096134 other upstream 1712206 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other upstream 1712298 11918171 ~ 11953633 (-) True LOC110502234

Expression Profile