RNA id: TU2094072


Basic Information

Item Value
RNA id TU2094072
length 2772
lncRNA type sense_over
GC content 0.46
exon number 1
gene id LOC110502266
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 10160479 ~ 10206199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGCTCCCTGAACGTTCAAGTGTGTAGAGGCGGCGCTAGCACCCCAGAGGGGTTAAAAGTATCCTCTTACATAGACCATTACCTGCTTTGCTCCCCTACACAGAAGCAAGCGGTACTAGACATGGCTTCTCTTGTATGCACTCTTGTAAACACTTCACCGAGCTAGGGTTCAAGGTCAACCAGAAAAAGAGCTGTTTGGTGCCCACTCAGAGAATAGAATACCTTGGCGTCAAGCTGGATTCTCTCTTATCGGGCTACACTATTGGACAGCCACGCTCAAAACATGTCTCAGAGTTCTTGGGTTGATGGCGTCCACCTCAGTAGTACCACTAGGACTACTGAGAATGACACTTCCAGAGTTGGGTAAAAATTGTCAACGTTGGCACCTCAATCGAAAGATGAAGGTTTCCACGGACTGTCTCAGCTCTTCGTCACTGGAAGATCCCCTCAATCTTCTTTTCAGGCACCCCCTTAGGGGTAGTGTCATCGAGGAAGGAGGTGACGACAGATGCATCAGTCAAAGGATGGGGCGCAGTTCACGAGGGAAGAGCAATAAACAGACTGCGATCCCCACAGCTCCGCCACGCTCGTAAAGGACCTCAAACTGCTGAGTGTTTCATTTGAAATTGTCACATCCTGGTCAGAACAGACAATATTACTGGAGGCATACATCAACCACCAGGATGGCACTTTCTCGCTGCGCTTACACAGACTGCCAAGAGTATTCTGTGGAGCAGTGCACATCTCTCATTATGCGTGACTCATGTCCCGGGTGTACTGAATGTGGGAGCAGACTTGTTGTCCAGGGGGAAtcccagatctggggaagagttaCCGTAGATCGCTTCACAGAAAGACACGTTGTCCCTTGGCCAAGAGTGTTGCTCTATGCTTGATCCTCCCCTCTCTGAACAGAGTGAGGGAACAAGGCTTATCCCTGATCTTGATAGCCCCTCGATGGCCAGGAAAGCTCTGGGTAGCAAAGCTCACTTTACGACGAGCCCTGGCAGCTACCATTACGCAAGGGATCTACTGACCCAAGCGAACAGAGAGATTTTCCACCCTTACCCGGAAACCATGACCCTCACTGTATGTGAACAAGTGGTGCGTATTTGAGAGGTGGTGTGACCAGAAACAGAATTCCTTACCAATGCTCTGTATCCAAGGTTTTATGCTTCTTGCAGGATTTTAGACGGAGGGGAGGCATTCTCCACTGTTAAGGTTTATTTAGCCGTCATATCTGCCTGTCGTATAGACTTCAACAATCACACAGTAGGGAAACGCCCTCTTATGTTTTATGAAGAGAGTGCGTCGTTTACGCCGTCGCCAAGCCTTTAACTCAGTCTTGGTACTTTGCTTGAGGCAATTTCCCAGCAGTTGCTGGAAAGTGTGGAGATGAAATATCTCTGCCCAAAACGAGTGAGTGAGTTGCATGCActgtcagttttttttttttttttttttttaaccaggtaagtcagttaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcggctcgggggtttgaacttgcaaccttccggttactagtccaacgctctaaccactaggctaccctgctgccccagttCAACATTCATGCCTACAGTTTGCCCCAGGGTTATCCAAGGTAACACTGTAACTCAACCCTGCTTTCATGCCTAAGGTCAGCGGCAATTACAATTGTCTAGTCTTGGAGTTTATGGCTTTCCACCCGCCGCCCTTCACTTCTATGGAAGAAGAGCATCTCCACCGTTTGTGTCCAGTACGAGCTTTGAACATCTAttctgaacagaaatataaagcGCAACATGCTAAAAAAAATGTTGAGTTaaagttcataaggaaatcagtccatttaaataaatgaactatgccctaatctattgattttacatgactgggcaggggtgcagccattggtgggcctgggagggcatagacctcatgctgtttaatcagcttcttgatatgccacacctgtcaggtggatggattatcttggctaaggagaaatgctcactaactgggatgtaaacaaatgtgtacaATTTTAAATGaagaagctttttgtgcgtattgaatgtttatgggatcttttatttcagctcatgaaaccaacactttatatggtgcatttatatttttgttcagtatacttggATAGAACGAGAGCATGGTAAGAGTGACCAACTCTCCATCTCCTAGGTGTCCCCCCTGCAAGAGGGCCCCTCTCTTGTCAACGACTATCCCATAGTGGAGGCTATTAAAATAGCAAGGGTTTGCAGCCCCCTGGGGGCTTGAAGGCTCATCCCACTAGCTCTTTGGCACTGATTAAGGGCATTTGTTTGCAATACTGCACGTTGGGCCACCCCTCATACATTTGAGGTTTTAACAGCTGGATGTTTCTGCTCCTTCGTTTGTGCCTCAGGGGTGATATTGTTGGGACTAGTCTGGCTTCGGAGAGCAAGTGGGCAATCTATATCCCCATTGTGAGAAAGTGAAGCGATATATTTGAAATAGAACTTGGGGTTACTTACGTAACCGAGATTACGAAGTTACATTTACAACATTGTGAGTGACTAGACTAAACACGATTGCACTGCATTTAAACACATTTTCCAGCGATAATCCCATGTCTGAATGTCTGTGGTTGTACTTCACCTCTCAAACAACTGACTTGTCATTTTTTTATGTTGTACTCAAATTTGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2093881 lncRNA downstream 21984 10137818 ~ 10138528 (-) True G1828083
TU2093864 lncRNA downstream 34032 10112241 ~ 10126480 (-) True G1828066
TU2093849 lncRNA downstream 98987 10040751 ~ 10061525 (-) True G1828052
TU2093842 lncRNA downstream 108351 10014324 ~ 10052161 (-) True G1828046
TU2093848 lncRNA downstream 117905 10035517 ~ 10042607 (-) False G1828052
TU2094073 lncRNA upstream 1409 10164692 ~ 10165375 (-) True LOC110502266
TU2094076 lncRNA upstream 14910 10178193 ~ 10178408 (-) True G1828262
TU2094077 lncRNA upstream 15302 10178585 ~ 10178824 (-) True G1828263
TU2094181 lncRNA upstream 210462 10373745 ~ 10374676 (-) True G1828357
TU2094189 lncRNA upstream 224313 10387596 ~ 10387927 (-) True G1828365
XM_021580171.2 mRNA downstream 6223 10140097 ~ 10154289 (-) True LOC110502268
XM_021580170.2 mRNA downstream 6224 10140097 ~ 10154288 (-) False LOC110502268
XM_036960056.1 mRNA downstream 6907 10140097 ~ 10153605 (-) False LOC110502268
XM_036960055.1 mRNA downstream 8245 10140097 ~ 10152267 (-) False LOC110502268
XM_036960126.1 mRNA downstream 245804 9882043 ~ 9914708 (-) False LOC110531428
XM_021580166.2 mRNA upstream 46218 10209501 ~ 10216489 (-) True LOC110502265
XM_036959987.1 mRNA upstream 98783 10262066 ~ 10308838 (-) False LOC110502263
XM_036959989.1 mRNA upstream 98783 10262066 ~ 10308838 (-) False LOC110502263
XM_036959990.1 mRNA upstream 101008 10264291 ~ 10308838 (-) True LOC110502263
XM_021580163.2 mRNA upstream 147493 10310776 ~ 10328183 (-) True LOC110502262
TU2093499 other downstream 471668 9688457 ~ 9688844 (-) True G1827761
TU2093423 other downstream 615539 9544383 ~ 9544973 (-) True G1827690
TU2093387 other downstream 694022 9466070 ~ 9466490 (-) True G1827656
TU2093356 other downstream 735031 9413945 ~ 9425481 (-) True LOC110512783
TU2092973 other downstream 1000897 9159197 ~ 9159615 (-) True G1827339
TU2095319 other upstream 1039784 11203067 ~ 11203996 (-) True G1829417
TU2095870 other upstream 1570147 11733430 ~ 11733926 (-) True G1829918
TU2095938 other upstream 1637400 11800683 ~ 11803131 (-) False LOC118943913
TU2096134 other upstream 1754796 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other upstream 1754888 11918171 ~ 11953633 (-) True LOC110502234

Expression Profile