Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00051818 |
| length | 785 |
| RNA type | processed_transcript |
| GC content | 0.51 |
| exon number | 6 |
| gene id | XLOC_026597 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 36234060 ~ 36246975 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000338 | protein deneddylation | biological_process |
| GO:0008180 | COP9 signalosome | cellular_component |
| id | description |
|---|---|
| ko04121 | Ubiquitin system |
| id | description |
|---|---|
| ZDB-GENE-041111-240 | Predicted to act upstream of or within protein deneddylation. Predicted to be located in cytoplasm. Predicted to be part of COP9 signalosome. Orthologous to human GPS1 (G protein pathway suppressor 1). |
| ensembl_id | ENSDART00000132883 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00051807 | lncRNA | downstream | 125021 | 36093640 ~ 36115291 (-) | True | XLOC_026592 |
| TCONS_00051804 | lncRNA | downstream | 375691 | 35862376 ~ 35864621 (-) | True | XLOC_026591 |
| TCONS_00051803 | lncRNA | downstream | 382152 | 35857130 ~ 35858160 (-) | False | XLOC_026591 |
| TCONS_00053069 | lncRNA | downstream | 665861 | 35565128 ~ 35574451 (-) | True | XLOC_026588 |
| TCONS_00053068 | lncRNA | downstream | 1292251 | 34947402 ~ 34948061 (-) | False | XLOC_026585 |
| TCONS_00053070 | lncRNA | upstream | 73517 | 36320239 ~ 36323625 (-) | True | XLOC_026600 |
| TCONS_00051826 | lncRNA | upstream | 182234 | 36428956 ~ 36438526 (-) | False | XLOC_026603 |
| TCONS_00051827 | lncRNA | upstream | 184223 | 36430945 ~ 36438351 (-) | False | XLOC_026603 |
| TCONS_00051828 | lncRNA | upstream | 192778 | 36439500 ~ 36440687 (-) | True | XLOC_026603 |
| TCONS_00051832 | lncRNA | upstream | 204913 | 36451635 ~ 36457308 (-) | True | XLOC_026604 |
| TCONS_00051812 | mRNA | downstream | 29968 | 36173203 ~ 36210344 (-) | False | XLOC_026596 |
| TCONS_00051813 | mRNA | downstream | 30376 | 36180822 ~ 36209936 (-) | True | XLOC_026596 |
| TCONS_00051811 | mRNA | downstream | 68344 | 36170943 ~ 36171968 (-) | True | XLOC_026595 |
| TCONS_00051810 | mRNA | downstream | 86721 | 36136564 ~ 36153591 (-) | True | XLOC_026594 |
| TCONS_00051809 | mRNA | downstream | 87338 | 36136530 ~ 36152974 (-) | False | XLOC_026594 |
| TCONS_00051820 | mRNA | upstream | 2129 | 36248851 ~ 36260102 (-) | True | XLOC_026598 |
| TCONS_00051821 | mRNA | upstream | 15871 | 36262593 ~ 36272670 (-) | True | XLOC_026599 |
| TCONS_00051822 | mRNA | upstream | 85857 | 36332579 ~ 36364903 (-) | True | XLOC_026601 |
| TCONS_00051823 | mRNA | upstream | 154383 | 36401105 ~ 36420397 (-) | False | XLOC_026602 |
| TCONS_00051824 | mRNA | upstream | 162871 | 36409593 ~ 36419641 (-) | True | XLOC_026602 |
| TCONS_00051816 | other | downstream | 1271 | 36234207 ~ 36239041 (-) | False | XLOC_026597 |
| TCONS_00051795 | other | downstream | 1292278 | 34947638 ~ 34948034 (-) | True | XLOC_026585 |
| TCONS_00051794 | other | downstream | 1426343 | 34805839 ~ 34813969 (-) | True | XLOC_026584 |
| TCONS_00051789 | other | downstream | 1464358 | 34767541 ~ 34775954 (-) | False | XLOC_026583 |
| TCONS_00051787 | other | downstream | 1486771 | 34743579 ~ 34753541 (-) | True | XLOC_026582 |
| TCONS_00051846 | other | upstream | 509311 | 36756033 ~ 36756149 (-) | True | XLOC_026612 |
| TCONS_00051856 | other | upstream | 721149 | 36967871 ~ 36967993 (-) | True | XLOC_026618 |
| TCONS_00051859 | other | upstream | 828976 | 37075698 ~ 37075813 (-) | True | XLOC_026621 |
| TCONS_00051873 | other | upstream | 1426926 | 37673648 ~ 37699951 (-) | False | XLOC_026627 |
| TCONS_00051881 | other | upstream | 1520563 | 37767285 ~ 37773800 (-) | False | XLOC_026629 |
