RNA id: TCONS_00051819


Basic Information

Item Value
RNA id TCONS_00051819
length 720
RNA type processed_transcript
GC content 0.50
exon number 6
gene id XLOC_026597
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36234060 ~ 36246975 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTCTGCAGAGGAGGAGGAGATGCCACTACCCGTGCAGGTCTTTAACTTTCAGGAGAGTCTTCTTCAGTCAGGGTGGATGGATGCTGAAGAGCAGGATCAGGGTAGAATCAGGGAAAGCTCAGGTGTAGAGCTGAATGTCTACTCTCAAACAGGCATGTCTGACCAATACATGGAGTTTACAGTGAGATCCAGTGTGTGCAGCTTCAGCTTTTCTTCACACTCTCTGGAGGGGTCTGTAGAGCCCATGCAGATAGATGCTGACCCTCAGGAAGACCAGCAGAATGCGCCTGACACCAACTATGTTGTGGAAAACCCGACATTGGATCTAGAGCAGTATGCGTCCAGCTACAGTGGACTGATGAGGATCGAGAGGCTGCAGTTTATTGCAGACCACTGCCCTCAGCTACGAGTGGAAGCACTGAAGATGGCCCTGTCCTTTGTCCAAAGAACCTTTAATGTTGATGTCTATGAAGAAATCCATCGCAAACTCACTGAAGCCACAAGGCAATTCCTGGAAGTGCAAGGAGTCCCAGATGCGGTACCAGAGGGGGCAGTTGAACCCCCTCCTCTCGACACAGCCTGGGCAGAATCTACCAGGAAAAAAGCCCTGCTCAAACTGGAGAAGCTGGATACTGACCTTAAAAACTATAAGGGAAACTCCATCAAAGAAAGCATAAGGAGGGGTCACGATGACCTTGGAGATCACTATCTTGACTGC

Function

GO:

id name namespace
GO:0000338 protein deneddylation biological_process
GO:0008180 COP9 signalosome cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-041111-240 Predicted to act upstream of or within protein deneddylation. Predicted to be located in cytoplasm. Predicted to be part of COP9 signalosome. Orthologous to human GPS1 (G protein pathway suppressor 1).

Ensembl:

ensembl_id ENSDART00000145206

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051807 lncRNA downstream 126377 36093640 ~ 36115291 (-) True XLOC_026592
TCONS_00051804 lncRNA downstream 377047 35862376 ~ 35864621 (-) True XLOC_026591
TCONS_00051803 lncRNA downstream 383508 35857130 ~ 35858160 (-) False XLOC_026591
TCONS_00053069 lncRNA downstream 667217 35565128 ~ 35574451 (-) True XLOC_026588
TCONS_00053068 lncRNA downstream 1293607 34947402 ~ 34948061 (-) False XLOC_026585
TCONS_00053070 lncRNA upstream 73444 36320239 ~ 36323625 (-) True XLOC_026600
TCONS_00051826 lncRNA upstream 182161 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00051827 lncRNA upstream 184150 36430945 ~ 36438351 (-) False XLOC_026603
TCONS_00051828 lncRNA upstream 192705 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051832 lncRNA upstream 204840 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00051812 mRNA downstream 31324 36173203 ~ 36210344 (-) False XLOC_026596
TCONS_00051813 mRNA downstream 31732 36180822 ~ 36209936 (-) True XLOC_026596
TCONS_00051811 mRNA downstream 69700 36170943 ~ 36171968 (-) True XLOC_026595
TCONS_00051810 mRNA downstream 88077 36136564 ~ 36153591 (-) True XLOC_026594
TCONS_00051809 mRNA downstream 88694 36136530 ~ 36152974 (-) False XLOC_026594
TCONS_00051820 mRNA upstream 2056 36248851 ~ 36260102 (-) True XLOC_026598
TCONS_00051821 mRNA upstream 15798 36262593 ~ 36272670 (-) True XLOC_026599
TCONS_00051822 mRNA upstream 85784 36332579 ~ 36364903 (-) True XLOC_026601
TCONS_00051823 mRNA upstream 154310 36401105 ~ 36420397 (-) False XLOC_026602
TCONS_00051824 mRNA upstream 162798 36409593 ~ 36419641 (-) True XLOC_026602
TCONS_00051816 other downstream 2627 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051795 other downstream 1293634 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051794 other downstream 1427699 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051789 other downstream 1465714 34767541 ~ 34775954 (-) False XLOC_026583
TCONS_00051787 other downstream 1488127 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051846 other upstream 509238 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 721076 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051859 other upstream 828903 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051873 other upstream 1426853 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 1520490 37767285 ~ 37773800 (-) False XLOC_026629

Expression Profile

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