RNA id: TCONS_00053070


Basic Information

Item Value
RNA id TCONS_00053070
length 419
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id XLOC_026600
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36320239 ~ 36323625 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCGAAGCTCTGAATGCAGACGTAAACTCCGACAGCCGATGACATTCTCTGAATCCCGATCACGTCATCTTCAGCCAGCATGGGGATGTGACTGGAGGCCACAGTGCCCAGCAGGAACCCGTACAAACAAGAACAGGACATGAGCCCCCAAAACTCTGAGACGAAGGTGAAGACCACCAGCACCGGACATAGCAGCACTGTGCAGATCAGCAGGATGTAGATTTTGCGGATGGGCTTGCGATTGAGGACCCAGCCCATGGACAAACGACCCCCAATCTCAGCCACGGCCATAGCGGACAGCATGTAGGTGGCGCTTTTCTGAGATACTCCTCGACTTACACTCAGCTGAATGATGTAGATCTGTGGTGCGAAGAAGCCCAGTGTTGCGAACAGACCAAACAGTGCATAGCAgagatggg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051807 lncRNA downstream 204948 36093640 ~ 36115291 (-) True XLOC_026592
TCONS_00051804 lncRNA downstream 455618 35862376 ~ 35864621 (-) True XLOC_026591
TCONS_00051803 lncRNA downstream 462079 35857130 ~ 35858160 (-) False XLOC_026591
TCONS_00053069 lncRNA downstream 745788 35565128 ~ 35574451 (-) True XLOC_026588
TCONS_00053068 lncRNA downstream 1372178 34947402 ~ 34948061 (-) False XLOC_026585
TCONS_00051826 lncRNA upstream 105331 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00051827 lncRNA upstream 107320 36430945 ~ 36438351 (-) False XLOC_026603
TCONS_00051828 lncRNA upstream 115875 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051832 lncRNA upstream 128010 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00053071 lncRNA upstream 259475 36583100 ~ 36587136 (-) True XLOC_026606
TCONS_00051821 mRNA downstream 47569 36262593 ~ 36272670 (-) True XLOC_026599
TCONS_00051820 mRNA downstream 60137 36248851 ~ 36260102 (-) True XLOC_026598
TCONS_00051815 mRNA downstream 73264 36234066 ~ 36246975 (-) False XLOC_026597
TCONS_00051817 mRNA downstream 73264 36234402 ~ 36246975 (-) False XLOC_026597
TCONS_00051814 mRNA downstream 73340 36234060 ~ 36246899 (-) False XLOC_026597
TCONS_00051822 mRNA upstream 8954 36332579 ~ 36364903 (-) True XLOC_026601
TCONS_00051823 mRNA upstream 77480 36401105 ~ 36420397 (-) False XLOC_026602
TCONS_00051824 mRNA upstream 85968 36409593 ~ 36419641 (-) True XLOC_026602
TCONS_00051825 mRNA upstream 104363 36427988 ~ 36440705 (-) False XLOC_026603
TCONS_00051829 mRNA upstream 117681 36441306 ~ 36458165 (-) False XLOC_026604
TCONS_00051819 other downstream 73444 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 73517 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051816 other downstream 81198 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051795 other downstream 1372205 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051794 other downstream 1506270 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051846 other upstream 432408 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 644246 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051859 other upstream 752073 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051873 other upstream 1350023 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 1443660 37767285 ~ 37773800 (-) False XLOC_026629

Expression Profile

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