RNA id: TCONS_00051822


Basic Information

Item Value
RNA id TCONS_00051822
length 1574
RNA type mRNA
GC content 0.50
exon number 4
gene id XLOC_026601
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36332579 ~ 36364903 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTCGATGAAGTTGCACAAAGATGGCGTATTTCCTGCAGTCAGGGTCCTTTCTATCCCTTTGTTTTCCAAACTGTTTTCTCGACAGCAGCGATGCGGAACAGCTAAGGAAATCTAAAGAAATAGACCGAGAAATTTTCAAAGAAAAAACCTTTGTGAAACGCCTAGTGAAGATACTTTTGCTCGGCGCCGGAGAGAGCGGCAAGTCCACTTTCCTCAAGCAGATGCGCATCATACACGGGGATGACTTCGATAAGGGGGACAAAGAAGAGTTCAGAGGCACCATTTACAGTAATGTTATGAAAGGTGTTCGAGTGCTTGTGGATGCCAGAGAAAAGCTACATATCCCATGGGGAAACCCTTCAAACCAGACACATGCAGACATCATGATGGCTTTTGACACACGGTCGACCATGGTGTCGCAAGGGATGTTGGAGACCAAATTGTTCCTGCAGTACCTGCCCTCAATCCGTGCCCTCTGGGCCGACATCGGCATACAGCACGCATATGACCGGCGTAGAGAGTTTCAGCTGGGAGAATCTGTGAAGTATTTCTTGGACAACTTGGACAAACTCGGAGCACCGGACTACTTACCAACGCAGCAAGACATTCTGCTGGCACGTAAGCCCACCAAAGGCATTCATGAGTACGACTTTGAGATCAAGAACGTGCCCTTTAAGATGGTGGACGTCGGCGGGCAGAGGTCGGAGCGCCGTCGGTGGTTTGAGTGCTTCGAAAGCGTCACTTCCATCCTCTTCCTGGTCTCGTCCAGCGAGTATGACCAGGTGCTGATGGAGGACCGGCAGACCAACCGTCTCATGGAGTCGCTCAACATCTTCGAGACCATAGTCAACAACCGCGTCTTCAACAACGTTTCCATCATCCTGTTCCTCAACAAGACGGACTTGCTGGAGGAGAAGGTCAAATCAGTGTCCATCCAGGACTATTTCCCCGAGTTCACAGATGATCCATGGTGCCTGGGGGACGTGAAGAACTTCCTGGTGGAGTGTTTCCGAAACAAGCGCCGAGACCAGCAGCAGAAGCCCCTCTACCACCATTTCACCACCGCCATTAACACGGAGAACATTCGCCTGGTCTTCCGTGACGTCAAGGACACCATCTTGCATGACAACCTCAAACAGCTCATGCTGCAGTGATGCCAGTCCAACCGTTTCCTTTCAGATCACTCCAAAAATAACCCTCTTCTGCTCAGATGTTTGTACTCCGCACAGTAACCTTTCTCAATAGCTCTGACTGGCTTTCGTGCGAGGAAGAAGAAGCCCTAGCCTTCTGTCATGAGCATGGGACGGCAGGTAGTTTTTCTCTTAAAAAGCAGGTCTAGAGAAGAGAGTGCGCTCGTCCACTCACACGTGAGTGTCCTGCCAGAGAAGCTGTACATGTCATTGAGCGCCACCCTCTGCCTGAAGGTGCCAAACGCTCCCTCGAATAGAGGACAAAAGCAGGAAGAGATCCTAGCATCTGTTACCTTTGAGCCTTGTATTACTGACCAAATAGCAAGATGAGATGCAAATGCTGTTTTAACCTTTTAACAGGAACCATGTTCTGAGCCTTTCT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007492 endoderm development biological_process
GO:0009826 unidimensional cell growth biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:0031584 activation of phospholipase D activity biological_process
GO:0001525 angiogenesis biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0060973 cell migration involved in heart development biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0043149 stress fiber assembly biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0003262 endocardial progenitor cell migration to the midline involved in heart field formation biological_process
GO:0048932 myelination of posterior lateral line nerve axons biological_process
GO:0060026 convergent extension biological_process
GO:0007165 signal transduction biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0031526 brush border membrane cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function
GO:0031752 D5 dopamine receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8277 Predicted to enable D5 dopamine receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Acts upstream of or within several processes, including circulatory system development; gastrulation; and glial cell development. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in brush border membrane. Is expressed in gill; head; intermediate cell mass of mesoderm; nervous system; and trunk. Orthologous to human GNA13 (G protein subunit alpha 13).

Ensembl:

ensembl_id ENSDART00000028883

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053070 lncRNA downstream 8954 36320239 ~ 36323625 (-) True XLOC_026600
TCONS_00051807 lncRNA downstream 217288 36093640 ~ 36115291 (-) True XLOC_026592
TCONS_00051804 lncRNA downstream 467958 35862376 ~ 35864621 (-) True XLOC_026591
TCONS_00051803 lncRNA downstream 474419 35857130 ~ 35858160 (-) False XLOC_026591
TCONS_00053069 lncRNA downstream 758128 35565128 ~ 35574451 (-) True XLOC_026588
TCONS_00051826 lncRNA upstream 64053 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00051827 lncRNA upstream 66042 36430945 ~ 36438351 (-) False XLOC_026603
TCONS_00051828 lncRNA upstream 74597 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051832 lncRNA upstream 86732 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00053071 lncRNA upstream 218197 36583100 ~ 36587136 (-) True XLOC_026606
TCONS_00051821 mRNA downstream 59909 36262593 ~ 36272670 (-) True XLOC_026599
TCONS_00051820 mRNA downstream 72477 36248851 ~ 36260102 (-) True XLOC_026598
TCONS_00051815 mRNA downstream 85604 36234066 ~ 36246975 (-) False XLOC_026597
TCONS_00051817 mRNA downstream 85604 36234402 ~ 36246975 (-) False XLOC_026597
TCONS_00051814 mRNA downstream 85680 36234060 ~ 36246899 (-) False XLOC_026597
TCONS_00051823 mRNA upstream 36202 36401105 ~ 36420397 (-) False XLOC_026602
TCONS_00051824 mRNA upstream 44690 36409593 ~ 36419641 (-) True XLOC_026602
TCONS_00051825 mRNA upstream 63085 36427988 ~ 36440705 (-) False XLOC_026603
TCONS_00051829 mRNA upstream 76403 36441306 ~ 36458165 (-) False XLOC_026604
TCONS_00051830 mRNA upstream 81679 36446582 ~ 36458165 (-) False XLOC_026604
TCONS_00051819 other downstream 85784 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 85857 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051816 other downstream 93538 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051795 other downstream 1384545 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051794 other downstream 1518610 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051846 other upstream 391130 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 602968 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051859 other upstream 710795 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051873 other upstream 1308745 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 1402382 37767285 ~ 37773800 (-) False XLOC_026629

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_06619452_06652257.mRNA True 1894 mRNA 0.50 9 CI01000046 6619166 ~ 6652257 (-)
bowfin (Amia calva) AMCG00013191 True 705 mRNA 0.56 3 CM030125.1 23917200 ~ 23927578 (-)