RNA id: TCONS_00051823


Basic Information

Item Value
RNA id TCONS_00051823
length 5351
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_026602
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36401105 ~ 36420397 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tggtaatgttatgtttgttaaataactgtatttactattattctgtatgtttaaaaccagcagattaTACTATGTATTTAACATGTCATATACTTACtcgtcctaagacaagaatgggtattgttttggttttatgtcaaactactgtaggttttaggttgtcTACAGCAGGTATAGGCTACCTATATCTTaatattggtagtcagagttattttaatgacccaaatcaagtAAAATGTCTCTTACTCAATTACTTTTAGCAttcaaaagtcaaatttaagtacataaaatacagtttcctacaacaaaattttgtcttgtgaaaATGTCCAGTGGTTGGtgagaaaaaaagttaatgtgaagttatatatataaaagaagttggacaagttgtcataatatttagtcatattaatatgttaattgtataataaatatataatattaaattacataaaataattaaaagaacaaatgctggaccttttggccgTAGGGGGTGGCTCGTTCGACGCCCCCCACCCTGGCTACGGGCATGGGAATGACAAGCTCGActtgtattataatattatataatattgacTTGACATTTTTAGGGATTTTACAGTGTTGTAGTACCAAACCTCCTCTAAAAGTGTCGCTGTCTCACTTCATGCATGCGAGGATTGACCTCTGACTCTTTGTTTACGTGGAAGGAGAGCTGTTCTTGCTTCCGGGTTCTTATTTCTGCAGGTAACTGACCAGTTTTAAAGAGATGGCTACGGTACCGGCCCAGTCTCTACGGGTGTCAGAGATTAAAGACCCCACCGTTTTATTTGAACGGTACGGAACGGATGAGATCCGCGCTGTGGAGAGGAAAGTGCGCGGAGAGATTGAGCAGAAGAAGGAGGAACTCCGGCAGATGGTCGGTGAGCGGTACCGAGACTTGATCGATGCCGCTGACACGATCGGTGAGATGAGACAGTGCTCGGAAAGTGTCGTGCATTCCATCCAGGACATGTACCGGTACTGCCATAAACTCAAACAGGCCAAACAGACCCCGCAGTCCAGCAGCAGAGCAGAGCAGGGTCAGAAGCAGTCGCAGGAGAAGTTCTACACAATGGCGTCCCAGATAAAGCTCCTCCTTGAAATCCCGGAGCGCGTCTGGAGCGCTATGGAGTCCTCGCAGTACCTGCAGGCCACACAGCTCTACCTGCTGTGCTGTCACCTTCATAGCCAGCTACAACTGGAGGGTGGAGGTCATCAGTACAGCCCCGTCCTCTCTCGCTTTCCCATCCTGGTGCGCCAGGTCGCAGCTGCAGGTCATTTCAGGTCTACAATCTTGCTGGAGAGTAAGTCAGTGCTGCGCGGCAGGGCGGTGTCCGATCAGGCGATCGCTGAAGCGCTAGTCTCCACCATGCTCCTGGAGGACAGCTCACCTCGACAGGCGCTTGCTGATTTCCTGCTGGCTAGGAAAGCCTCCATTCAGCAACTGCTTAATCAGCCTCAGCATGgtGCTGGGGTTAAAGCACAGGTTTGTTCTTTAGTGGAGCTGCTGGTTACGACTCTGTACCAGGCGTATGCTGTGTTTTATGTGCCTCCAGAGGGACAAGTGTCTGATACCGGTTTGGGCTGTGGCCTTCTTTTCACCACTTTGGAGAATGTAACCTCCAACACCTCCTCTGGTAAAGAGAAGAAGGTCCTGGATAAGGAGATGAGCACAGGCAGCTGGTTTAAACACCTTCCTCCTTCAGTGATGAATTTCCAGCCGGTTCTTCGGACATTAGCGCAGCCCATACAGAGAGAGCAGCTCAGAGACACCCTGCAGCAGTGGATTGACACCTGTAAGGAGGATATCCGCAGTGGAGTCAGCAGTCTTCTGGTCTATGTTAAGAGTCTGAAGGGTCTGGCTGCGATTAGAGATGCCGTGTGGGAGCTGCTCAGTAGTGAATCCATCAGTCAGCACTGGAGTACTGTGTGTCAGTCCTTGCTCGAGCAACCTCTGGCCTTGTGGGACGACCTTTTACAGCAGCTCTTCCTGCGGAGACTTCAGGTGATCACGCAGGAGGGCACAGAAGGGATCTCCAGCAGCTCCAGACAGCTGTTATCCTCAGCTCTGCGGGATCTGCAGGGTCAAGCCTCTGCCGGGAGCTTCAGTCGGGGGGCTCAGTACGAGAGTGACGTCGGAGCGTTCCTGTGGTCCGAGTCTCAGAGTGACCTGCTCAGTGACACAGCCTGGGTGAGCGTAGCCCAACGCAGTCCACAACAAAAGAGTGGCCTGTCCATGAAGACTCAGGCCCTCACACCCTGCGTCCAGACCTTCTGTTCCTCGCTGGACTCCAAACTCAAAGCCAAGCTAGAAGATCTGCAACACTACTTACCCTCTGACACAAATGGCAAGGAGACTTTAGAGAAGTACACAGTCTCGTCGAGTACACCTATAAATCGTTTTATGGATGCTGAAGCGGTGGAGGACATTCTTAGAGATCACTGCCTTGCGTGCGTTCGGGACGTCCTGGCTAGTGTGCGCTCTGAGCTGGCTAACGCTCAGGCTGAGACCAGCAGCCACAGCCAGTTGAGTTCAGTGCTGTTTATGGCCAGATTGTGCCAGTCCATGGGGGAGCTGTGTCCTAGTCTGAAGCAGTGTATCCTAGGAAAGCAGGGGGGTGTGGATGTTGTGAGTAGAGGCACACCACGACAGAGCAAGAAGCTGGGGAAAAGTGGTACTGCCAAAGCAGCCGATGTGAGCCCAGCTCAGGCTAAGTGGAGCTGTCTGAAAGAGGAGCTGCTGTCCTGCAGTATGGATGCCTATGGAATCTGGAGCTCAGCACTCACCAGAGCACTTGTGGGGAGTTTTGCTGCAACTCTCCATGCTGAAAATGCCGGATCCATCCTGGGTACTGCAACTAATTGGGAAGAGCTAGAAATACAGGAAGAGGCAGAGTCAGGAAACAGTGTAATGTCCAAAATACGCCTTCCTGTGCAGCCATCATGGTATGTTCAGTCGTTACTCTTCCACCTGTGCCTTGAGGTCAATCGAGTCGGAGGTCATGCTTTACCAAAAGTAACTCTGTTGGACATCCTAAAGGGTTGTCTAGACCAGGCCGTGAGCGAGTATGAAAGACTCACTCAAGACTCACAGAGCAAGGACACAGGCCTCCCCATGACCCAGAACAGAGCACTACAGCTGCTGTTTGACCTCCGCTATCTCACTGTCACTTTAGGGTCTCGTCTTGAGGAGGGTAGGAGCTCCCGCTCTCAGCAAGACCCAAGGGTCCAGCAGGTCTGCGACTCCCTGGAAAGTCACATCGATCCCTTTGACCTGGACGTTTTTACTCCACATCTGAACAGCAACCTTAACAGACTCTCACAAAGGACATCTGTGTTGTTAGGGCTGTTGACGGGCACAGAGAAGCAGTTCACGTCTAGGAGCAACAGCATCAACTCTCAGGAACCATATAACATCCTTCCTTTGGCCAGCAGTCAGATCCGGTTTGGTTTGCTGCCACAGAGTATGACAAACTCCCGCAAGACTAATTCTGCCACACATGGAGCAGACATCACTAGACCACTGGTAGGCTGCTTATAATGTACATGGATTTCATGAGATAGAATTTGTCATAATTACATCTGTTTTAAAAGCAAAGTAAACATTATGCGAAACAGAAAGAGTTGAGATGGTGTTTTAGTTTTCATGGCTTTCTACCTATGCTCCCAGTTTTTCATGGAGTAGAACTGCTGGATCTGGAGGCGATAGGTGATGTTATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAATAGTTTGGTATATTAACCTTCGGCCTACCCCTCAATCAACTTTGGTTTTAATAAGAAAaggtttgagcacccctggtctaaacagaATGTTCCCTAATGGTCATTTTTAGCTTCTCAATTTGCAACCATAAAATAACATTCCCAGAACGTTGTGGAAATCAAAAGCTGTGAGCTGAGGGTTTGTTCAAATAGAAAAGCAAGGTAAATAAATATAGGGCTATATTAATTATCTTCTATTATGCATCCATTATAAACCATCACACATCAATCACCATGCTGactttaattattttacagtaaaaagatACATGCATTTACTGTAACTACTGCACACATACAAAACATGCTGACGCTATAATGGGAAACAGAGACTGAATATAGTGTaaaccaatggtctcaaactcaattcctgaaggctgcagctctgcatagtttagcttcaaccacctccaactcacacctgttAATAGTCTattagtcttgaacaccttcattattccgatcagctgtgtttgattagggttggagcaaaactgtgcagagctgcggccctccaggaatccagtttgagacctatagtgtaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaacagaatcagtgcatgaaaataaatgtgtaatttagCCAACTACAAAAATATACTTTGGACATAATTATAGGAATTAGCTATTTAGCACTCGTGTATATATACAAAGCTGTCAGTTATTTTATATCTTCTTGGTATGGATTTAGTGTATAGCTCTATTATATGAGACTTTACACTGGACCTGTACATGCGGAGCACCACAGAGTCTTTATTTACTGACTGTCTGTTTTTCCAGACCTAACTGAGTTTCTTCATTCTGTTGAACACGTATATTTAAATTtgaaagaatgctggaaaccgatAGCCATTGACATATagagtgtttgttttttctactgttaatggttacaggtttgcaacattcttcataatatcttctacTTTGTTCGACAGAAAACAGAAACTTGTACAGTTTTGTAATGACGTAAGATTGAAAAAAAATCGGACTAGATGACCAAATATGGCAAACTATCCTGTTAAACCATTTCTgggtaacttttaaaaaatattgttatccGTCAGATTGTAGGTGTAGTATTTGCAGCGAGTCTCCTATTTGCGGTCTAGTTTGCTGGCCATCAGTTTTTTGATGTCGACGGGTCCTGCTGCGGCCGCGGCCTTTGCTTTCTCCTCCTGCTCCTTCTGGTAGGTGATGATGGGGCTGATGCTCGGCCGTCGGTTCCTCATGTTCTGCTCCAGCTGCGCTTCACTGAACAACAGAAGAGAACAGACCTTTTTATTGCAAAATACTGCAAGGTCGGGggcatttgttttatgtttcttCTGATCCAGAAATTgatatacagtggggaaaataagtattaaacatgtcatgttttttttcctgga

Function

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050302-128 Predicted to act upstream of or within intra-Golgi vesicle-mediated transport and protein transport. Predicted to be located in membrane. Predicted to be part of Golgi transport complex. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIg. Orthologous to human COG1 (component of oligomeric golgi complex 1).

Ensembl:

ensembl_id ENSDART00000167896

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053070 lncRNA downstream 77480 36320239 ~ 36323625 (-) True XLOC_026600
TCONS_00051807 lncRNA downstream 285814 36093640 ~ 36115291 (-) True XLOC_026592
TCONS_00051804 lncRNA downstream 536484 35862376 ~ 35864621 (-) True XLOC_026591
TCONS_00051803 lncRNA downstream 542945 35857130 ~ 35858160 (-) False XLOC_026591
TCONS_00053069 lncRNA downstream 826654 35565128 ~ 35574451 (-) True XLOC_026588
TCONS_00051826 lncRNA upstream 8559 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00051827 lncRNA upstream 10548 36430945 ~ 36438351 (-) False XLOC_026603
TCONS_00051828 lncRNA upstream 19103 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051832 lncRNA upstream 31238 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00053071 lncRNA upstream 162703 36583100 ~ 36587136 (-) True XLOC_026606
TCONS_00051822 mRNA downstream 36202 36332579 ~ 36364903 (-) True XLOC_026601
TCONS_00051821 mRNA downstream 128435 36262593 ~ 36272670 (-) True XLOC_026599
TCONS_00051820 mRNA downstream 141003 36248851 ~ 36260102 (-) True XLOC_026598
TCONS_00051815 mRNA downstream 154130 36234066 ~ 36246975 (-) False XLOC_026597
TCONS_00051817 mRNA downstream 154130 36234402 ~ 36246975 (-) False XLOC_026597
TCONS_00051825 mRNA upstream 7591 36427988 ~ 36440705 (-) False XLOC_026603
TCONS_00051829 mRNA upstream 20909 36441306 ~ 36458165 (-) False XLOC_026604
TCONS_00051830 mRNA upstream 26185 36446582 ~ 36458165 (-) False XLOC_026604
TCONS_00051831 mRNA upstream 27132 36447529 ~ 36458143 (-) False XLOC_026604
TCONS_00051834 mRNA upstream 39393 36459790 ~ 36481986 (-) False XLOC_026605
TCONS_00051819 other downstream 154310 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 154383 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051816 other downstream 162064 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051795 other downstream 1453071 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051794 other downstream 1587136 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051846 other upstream 335636 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 547474 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051859 other upstream 655301 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051873 other upstream 1253251 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 1346888 37767285 ~ 37773800 (-) False XLOC_026629

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_06664434_06673031.mRNA True 4375 mRNA 0.47 13 CI01000046 6663560 ~ 6673535 (-)