RNA id: XM_021580174.2


Basic Information

Item Value
RNA id XM_021580174.2
length 3830
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110502269
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 12392924 ~ 12411810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaacttttattttgaagtagCTACAGAAACGCCTTGGCCGCCCGGAAGTATAGTTTTTTTCGATCAGTCCACTTTCCTCTGTGGCGTTGTTTAGCATCCCTTTTGATGTTACTGCGTTTTATTCCTTGAAAGGAGGTCTGACTATATGAGTTCTAAATACACACTGATGGAAGGAATGAAAATGGATACCACTCACAATGTAACTCCCCATCAAACAAGACACACAAGTAGATTTCCCTGACGTTGAAGGGGAATGCAGACTTGTCACCCATAGACTGCATGCGAGTGTGATGCCCAGGCGAAGCTTGCCGCTGCAGGGCCGGATGCGCTGGATGCTCCTGGGGCTCTTCCTGTTGctggtcctcctcctctttgCTTACCTGCTGGAGTGCACTCCCCCAGCTGATGTTAGCCTGGTCCTGCCTGGTCTGGGAGCGGAGTCCCATGGAAAGGAGTACTACCAGGCACTGCTGCAAGAGCAGGAGGAGCGGTACCTCAGCCGCTCCGCCAGCCTCAAGCGGCAGATCGCCCAACTCAAGCAGGAGCTCCAGGAGATGAGTGAGAAACTCAAGGTCCTGCAGGACAGAAAGGAAGGTCCCGGGGTCCAGGGGCTTGTTGAAACCAAGGACCAGGAGCCTGGGGATCTTCTCGAattcctccactcccagatcgACAAAGCCGAGGTGAACACGGGAGCACGACTGCCCAGCGAGTACGCCCTGGTCCCCTTCGAGAGCTTCACCTCTAGTAAGGTGTATCAGCTGGAGATGGGGCTGACCAGGCACCCAGAGGAGAAGCCTGTGCGGAAGGACCGCAGGGATGAGCTGGTGGAGGTCATTGAGGCAGCCCTGGACGTCATAAACAACCCAGATGAGGAGGATGGCCAGGAGGATGATGTGCCCATGCAGAGGCAGACCTACACCGAGAGCCACTTTACTGAGGGGCTGTACAGAACAGAACGGGACAAGGGCACACTCTACGAGCTCTTCTTTGCAAAAGAGGACTCCGACAACTTCCGCCATGTCACTCTTTTCCGTCCTTTTGGTCCTTTAATGAAAGTCAGAAGCACGTCTGTAGAAACAAATGGAGTCATCATTAATATCATTGTGCCGTTGGCAGGCAGAACAGAGGCATTCTCACAGTTCCTACATAACTTCAGGGAAGTGTGCATAGAACACGATAGGCGAGTGCATCTTACAGTGGTCTACTTTGGACAAGAGGGCTTACAAGAGGTGACGTCTTACTTGGAAAAAATGTCCAGGGAGGCAAGCTTTTCCAACTACACACTTATCCCAGTGGACGAGGAGTTTTCCAGAGGCAGGGGTCTGGACATCGGTGCCCATACCTGGAAGAAGGGTGACGTATTGATGTTCTTCTGTGATGTGGATATCTACTTCACACTGGACTATCTCAACACCTGCCGTCTTCACACCGCTCCAAACAAGAGAGTCTTTTATCCGGTGGTTTTCAGTTTGTATAATCCTGCCATAGTCTATGGAAATCTGGAGCTGGCTCCCCCCATTGAAAGTCAACTTATTCACAAGAAAGATGCTGGATTCTGGAGAGATTTTGGCTTTGGAATGACATGTCAGTACCGCTCGGACTTCCTCAATATAGGAGGTTTTGACCTGGAAGTGAAAGGTTGGGGTGTGGAAGATGTCCACTTGTACAGGAAGTACCTGCGGAGCGACCTGATTGTGACGCGTACGCCGGTATCTGGCCTCTTCCACCTGTGGCACGAGAAGCAGTGTGCAGacgagctgactccagaacagtaTCGCATGTGCATCCAGTCCAAAGCCATGAACGAGGCTTCTCATTCCCACCTGGGCATGCTGGTGTTCCGCGAGGAGATCGAGAATCACCTCCGCAAGCAGGCCTACAAGACCCAGAGCAATACTGAAAATTGAATGGCTTTTCGTTAGGCGGCCATCTTGGGTACTCTAAATCAGAACTCCtcgcattttttatttttaaatataaatacaaGAACTGCGGTACACGTCGTTACTAACATGATTAAAACCAGTTTACACAATCTTGTTACATTTCACAGCTCAGCTAAAGACACCTATGAATGTACAAAAATGGATGTTAGTAAATGTGAAGTGTCAACTTAAACATTTCAAGAGACTGAGAATGGCACTACCTGTGTCAACACAAAAAGGCTAATGGAACATCTTTGAAGCTGGGGAAACTTGCATAACCTATCATTAGCAAGTCAAGGCAATGTTCTTGCCTGTGAGGTCAAGCAATCAATGGacaagtgttgttttttttaaatcgctACTATAACCTGTTCTCTCTATAGCCATATTGTTTAATTTGTGTAAAAATGTCAAGCTTGGTTTAACGTTGTACAGTGACTAAAAAAAGGGACCTTTTTATGTTAGAATATGATTTGTTCAAAGGAACCATCAGTCAGAGGCAGTGCTCATCAGCATCGAAGAAGGTTTATCCTATCAGTGTTTATTTGGAAATGTACCAAAATCTACAGATCGGACTGGATTGAAGAAGCAATTGAAACAAAGCTTTGCAAAAAAAGCATGCAGCACATTCATAATTTGCACAAGTGTCATTCTTCTGACATTTCTTGATTTATTCTCTGAGGATGATTCACAGTATTATTTCATTGAATTGAGCCTTGCAGCCAATCAATGCCAGTTAAATCTTGAATGGAATAAtgtataaataattattttttgcAGCCAGGGATGTCATACTTGTCTGAATATGTGCCTATTAACTGGAGATGAGGATATTAAAGatacttttatatatatagtgtatgtggacaccccttcaaattagtggatttggctatttcagccacacccattgctgacaggtgtataaaatcgagcacaccgccatgcaatctccatagacaaacattggcagtagaatggccttaaagaagagctcagtgactttcaaagtggcaccgtcataggatgccacctttccagagAGTCGGTTcgtcaaatttctaccctgctagagctgccccggtcaactgtaagtgatgttattgtgaagtggcaaTGTCTAGGATCAACAAcgtctcagccgcaaagtggtaggccacacaaactcacagaacgggaccgccgagtgctgaagcatgtaaaaaaagaaatccactctaccgagttccaaactgcctttggaagcaacatcagcacaagaactgttcgtcgggagctttatgaaatgggtttccatggccgagcagccatacacaagcctaagatcaccgttcgcaatgccaagcgtcggctggcgtggtgtaaagcttgccaccattggactctggagtagacaaatctgggtttagtggatgcaaggagaacgctacctgcaccGTTCATGGAGGAGGAATAGAGGTCTGGTGCTGTATTTCATTGGTTTctttagacgattctgtgcttccaactttgtagcaacagtttggggaaggccctttcctgttttagcatgacaatgccaccaggcacaaggcctcactaatgctcgtggctgaatggaagaaagtctccgcagcaatgttccaacatctaatggaaatcCTTGCCAGAAGAGtggtggctgttatagcagcgaagggtggaccaactccatattaatgtccatgactttggaatgagatgtttgacaagcaggtgtccacatacttttggtaatgtagaaTACTAAATATTCCTCCTGAGGCTATTGATACAGTTATAAGACTGAATGTTTGCAGCCATTCATATTGTTATCATTGCCATACTTGTATGTTTTGAAATGGTCTAATCTTTATTAATAAAAAGAAAAACATGAACTACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2096817 lncRNA downstream 26697 12366025 ~ 12366227 (-) True G1830754
TU2096816 lncRNA downstream 28972 12363291 ~ 12363952 (-) True G1830753
TU2096810 lncRNA downstream 34136 12357840 ~ 12358788 (-) True G1830747
TU2096809 lncRNA downstream 36337 12356255 ~ 12356587 (-) True G1830746
TU2096772 lncRNA downstream 83816 12308452 ~ 12309108 (-) True G1830709
TU2096978 lncRNA upstream 40067 12451877 ~ 12461155 (-) True G1830868
TU2096990 lncRNA upstream 53934 12465744 ~ 12465962 (-) True G1830880
TU2097001 lncRNA upstream 61279 12473089 ~ 12473346 (-) True G1830891
TU2097016 lncRNA upstream 69239 12481049 ~ 12481349 (-) True G1830906
TU2097203 lncRNA upstream 126767 12538577 ~ 12538811 (-) True G1831083
XM_021580092.2 mRNA downstream 49802 12289894 ~ 12343122 (-) True LOC110502227
XM_021580093.2 mRNA downstream 49805 12286371 ~ 12343119 (-) False LOC110502227
XM_021580095.2 mRNA downstream 49806 12289742 ~ 12343118 (-) False LOC110502227
XM_021580086.2 mRNA downstream 49808 12286371 ~ 12343116 (-) False LOC110502227
XM_021580176.2 mRNA upstream 2099 12413909 ~ 12443202 (-) False LOC110502270
XM_036960345.1 mRNA upstream 2099 12413909 ~ 12443202 (-) True LOC110502270
XM_021580177.2 mRNA upstream 99565 12511375 ~ 12525187 (-) False LOC110502271
XM_021580178.2 mRNA upstream 99565 12511375 ~ 12529518 (-) True LOC110502271
XM_021580180.2 mRNA upstream 148595 12560405 ~ 12575203 (-) False LOC110502273
TU2096134 other downstream 439291 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 439291 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 589793 11800683 ~ 11803131 (-) False LOC118943913
TU2095870 other downstream 658998 11733430 ~ 11733926 (-) True G1829918
TU2095319 other downstream 1188928 11203067 ~ 11203996 (-) True G1829417
TU2097183 other upstream 169006 12580816 ~ 12589700 (-) True LOC110502275
TU2099870 other upstream 2108539 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 2754399 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 3086944 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 3254393 15666203 ~ 15671180 (-) True tmem254

Expression Profile