RNA id: TU2096928


Basic Information

Item Value
RNA id TU2096928
length 2323
RNA type TUCP
GC content 0.43
exon number 3
gene id LOC110502269
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 12392924 ~ 12411810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaggaaaagcagccaacaagtgttcagcatatgtgggagctcctttaagactgttggaaaagcattccagATTCACAAGAAAGATGCTGGATTCTGGAGAGATTTTGGCTTTGGAATGACATGTCAGTACCGCTCGGACTTCCTCAATATAGTTTTGACCTGGAAGTGAAAGGTTGGGGTGTGGAAGATGTCCACTTGTACAGGAAGTACCTGCGGAGCGACCTGATTGTGACGCGTACGCCGGTATCTGGCCTCTTCCACCTGTGGCACGAGAAGCAGTGTGCAGacgagctgactccagaacagtaTCGCATGTGCATCCAGTCCAAAGCCATGAACGAGGCTTCTCATTCCCACCTGGGCATGCTGGTGTTCCGCGAGGAGATCGAGAATCACCTCCGCAAGCAGGCCTACAAGACCCAGAGCAATACTGAAAATTGAATGGCTTTTCGTTAGGCGGCCATCTTGGGTACTCTAAATCAGAACTCCtcgcattttttatttttaaatataaatacaaGAACTGCGGTACACGTCGTTACTAACATGATTAAAACCAGTTTACACAATCTTGTTACATTTCACAGCTCAGCTAAAGACACCTATGAATGTACAAAAATGGATGTTAGTAAATGTGAAGTGTCAACTTAAACATTTCAAGAGACTGAGAATGGCACTACCTGTGTCAACACAAAAAGGCTAATGGAACATCTTTGAAGCTGGGGAAACTTGCATAACCTATCATTAGCAAGTCAAGGCAATGTTCTTGCCTGTGAGGTCAAGCAATCAATGGacaagtgttgttttttttaaatcgctACTATAACCTGTTCTCTCTATAGCCATATTGTTTAATTTGTGTAAAAATGTCAAGCTTGGTTTAACGTTGTACAGTGACTAAAAAAAGGGACCTTTTTATGTTAGAATATGATTTGTTCAAAGGAACCATCAGTCAGAGGCAGTGCTCATCAGCATCGAAGAAGGTTTATCCTATCAGTGTTTATTTGGAAATGTACCAAAATCTACAGATCGGACTGGATTGAAGAAGCAATTGAAACAAAGCTTTGCAAAAAAAGCATGCAGCACATTCATAATTTGCACAAGTGTCATTCTTCTGACATTTCTTGATTTATTCTCTGAGGATGATTCACAGTATTATTTCATTGAATTGAGCCTTGCAGCCAATCAATGCCAGTTAAATCTTGAATGGAATAAtgtataaataattattttttgcAGCCAGGGATGTCATACTTGTCTGAATATGTGCCTATTAACTGGAGATGAGGATATTAAAGatacttttatatatatagtgtatgtggacaccccttcaaattagtggatttggctatttcagccacacccattgctgacaggtgtataaaatcgagcacaccgccatgcaatctccatagacaaacattggcagtagaatggccttaaagaagagctcagtgactttcaaagtggcaccgtcataggatgccacctttccagagAGTCGGTTcgtcaaatttctaccctgctagagctgccccggtcaactgtaagtgatgttattgtgaagtggcaaTGTCTAGGATCAACAAcgtctcagccgcaaagtggtaggccacacaaactcacagaacgggaccgccgagtgctgaagcatgtaaaaaaagaaatccactctaccgagttccaaactgcctttggaagcaacatcagcacaagaactgttcgtcgggagctttatgaaatgggtttccatggccgagcagccatacacaagcctaagatcaccgttcgcaatgccaagcgtcggctggcgtggtgtaaagcttgccaccattggactctggagtagacaaatctgggtttagtggatgcaaggagaacgctacctgcaccGTTCATGGAGGAGGAATAGAGGTCTGGTGCTGTATTTCATTGGTTTctttagacgattctgtgcttccaactttgtagcaacagtttggggaaggccctttcctgttttagcatgacaatgccaccaggcacaaggcctcactaatgctcgtggctgaatggaagaaagtctccgcagcaatgttccaacatctaatggaaatcCTTGCCAGAAGAGtggtggctgttatagcagcgaagggtggaccaactccatattaatgtccatgactttggaatgagatgtttgacaagcaggtgtccacatacttttggtaatgtagaaTACTAAATATTCCTCCTGAGGCTATTGATACAGTTATAAGACTGAATGTTTGCAGCCATTCATATTGTTATCATTGCCATACTTGTATGTTTTGAAATGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2096817 lncRNA downstream 26736 12366025 ~ 12366227 (-) True G1830754
TU2096816 lncRNA downstream 29011 12363291 ~ 12363952 (-) True G1830753
TU2096810 lncRNA downstream 34175 12357840 ~ 12358788 (-) True G1830747
TU2096809 lncRNA downstream 36376 12356255 ~ 12356587 (-) True G1830746
TU2096772 lncRNA downstream 83855 12308452 ~ 12309108 (-) True G1830709
TU2096945 lncRNA upstream 11971 12407618 ~ 12407925 (-) True G1830844
TU2096978 lncRNA upstream 56230 12451877 ~ 12461155 (-) True G1830868
TU2096990 lncRNA upstream 70097 12465744 ~ 12465962 (-) True G1830880
TU2097001 lncRNA upstream 77442 12473089 ~ 12473346 (-) True G1830891
TU2097016 lncRNA upstream 85402 12481049 ~ 12481349 (-) True G1830906
XM_021580092.2 mRNA downstream 49841 12289894 ~ 12343122 (-) True LOC110502227
XM_021580093.2 mRNA downstream 49844 12286371 ~ 12343119 (-) False LOC110502227
XM_036959982.1 mRNA downstream 49845 12285630 ~ 12343118 (-) False LOC110502227
XM_021580095.2 mRNA downstream 49845 12289742 ~ 12343118 (-) False LOC110502227
XM_021580086.2 mRNA downstream 49847 12286371 ~ 12343116 (-) False LOC110502227
XM_021580176.2 mRNA upstream 18262 12413909 ~ 12443202 (-) False LOC110502270
XM_036960345.1 mRNA upstream 18262 12413909 ~ 12443202 (-) True LOC110502270
XM_021580177.2 mRNA upstream 115728 12511375 ~ 12525187 (-) False LOC110502271
XM_021580178.2 mRNA upstream 115728 12511375 ~ 12529518 (-) True LOC110502271
XM_021580180.2 mRNA upstream 164758 12560405 ~ 12575203 (-) False LOC110502273
TU2096134 other downstream 439330 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 439330 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 589832 11800683 ~ 11803131 (-) False LOC118943913
TU2095870 other downstream 659037 11733430 ~ 11733926 (-) True G1829918
TU2095319 other downstream 1188967 11203067 ~ 11203996 (-) True G1829417
TU2097183 other upstream 185169 12580816 ~ 12589700 (-) True LOC110502275
TU2099870 other upstream 2124702 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 2770562 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 3103107 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 3270556 15666203 ~ 15671180 (-) True tmem254

Expression Profile