RNA id: XM_036960649.1


Basic Information

Item Value
RNA id XM_036960649.1
length 3473
RNA type mRNA
GC content 0.53
exon number 25
gene id LOC110502275
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 12580816 ~ 12651383 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTACAGTGCGTTGTCGGGGTGATTGGTGGGTGCTGTGTAGCTCACTGTCCTGACTGTACATTGTAGCACATACCTCTTTGCCGTGTGTGGGAGCGATATTTGATAAACAACACTGGATTGCAACAAAGGGCTGACCAACAGAGGGCAGTGTGAGATTTGAACAATCCTACAAGCTGGACCCTACAAGAGTGTGTAAAGGGAAGGGGGTCGTGACTCTGAGGGCCACTCTGGTACACATAGACGACGAGGACTGCGTCAGTAAAGATCCCAACGTCGAAACAGCACCAAGTAGTTGGATCGGCCAGATCAATGGAGACAGCTCTCTAACAGGATTGGCTGAGGGATGCTTCCACGACATCACAGACATCAACAGAACTCAACCCCAGGGAAGTTCTCCTGTGAGCACAGAAGAACGCCAGTTTCTTGCCTTTGACATTCAGAACCATATTACATCGACAAAggctccctctgcctacccatcCACCACCAAAACGGTCAACCCAACCATAGTTCTGCTACAACACAACAGAGACCCCACCCCAGAGAGGGACAAATTGTCTGATCCAGGACCTGTAGttggggcagagagagaacagagccaACACCCAGATATGGATGGCAAGAGGATGAGGTTCTCACAATCCCCTGTCTTGGGCCCACTGAACCAGCCCAACCTGCCAGTACGGAACACAGATAAGTCCAAGGACTGGTACAAGAACATGTTTAAACAAATACACCGAATTCCAGAACCTGTTGAGGAAAACCCATACCGCCCCACCTACATATTCCCTGAATTCTATGATCCTAGACAGATGAAAACCACAGaTGATGGTCCCTCCCCCTACGGTTTTGTGGAAGATGTGAAAGGGGTCCCACGGTCAAAAAGTGCTGCTGAAGTTGACCATAGGTTGTCTATGCCTGTGCCAACCCGGTCCTCTTCCCTCAAACCTTCCAAAAGGAACGAGTGGGAGCCCCCTGACAAAAAGGTAGACACCAGGAAGTACCGTGCCGAGCCCAAAAGCATCTTTGAGTACGAGCCGGGAAAATCATCGGTGCTGAAACTGGAGAGAAAGACTCAGGACATAAGTCCAGAAGATGTGCATTTAGAGAATGAGCCTTGGTATAGATTCTTTTCAGAGATGGATTTTGATGAAGCGAGTGCCCCCTCTTTCAGCCCCTTGGAAACACCCGCCGAACTACAGCAGTACTCCGGGTGTAAGGCCGGACACAGCGAGGTGGAGAAGGACGAAGGATCATCCAGCGGCGAGCCAGCGGCTCCAGAATGTGACCGCCATGTTTACAAGAGCGTCCTGGAGGGCGGCGACATTCCCCTGCAAGGTCTGCGGGCCATCAACAAGCGCCATGCCAGCACCTCCTCCAAAGaTTCAGAGTCCTTGACCCAAGGAGACCTTGGTGACGGCCTGGATGAGGTGGTCAGGAGACGCCATGGAGATAAAGAGAAAATTTTGGAAGAGCAACGGCGGCTgaagagggagcaggaggaggcTGACACAGCATCGAGGCGACACACGGGAATTGTTCCCACCCACCATCAGTTCATCACTAACGAACGTTTCGGAGACCTGCtcaacatcaacatcaatgaCGCAGACAAGAGGAAATCCGGATCAGAGAGAACTCCAGCCCTGGCTCGGTTTGACTTCAGAGCGGAGACTCTAAAGGAGTTACCATTTCAAAAGGGAGACATTGTGTACATCATTCGACAGGTGGATAATAATTGGTTTGAAGGGGAGCATCACGGCAGAGTCGGCATCTTCCCGCGGAGTTATGTTGAGCTCCTTCCCCCCACGGAGAAGGCCCAGCCAAAGAAGAGTGCCCCAGTGCAGGTGCTGGAGTATGGAGAGGCCATTGCACGCTTCAACTTTACAGGGGACACGGTGGTGGAGATGTCATTCAGAAAGGGAGAGAGGATCATCCTGATTCGCAGGGTCGATGAGAACTGGTACGAGGGCAAAGTCTCTGGCACCAATCGCCAGGGTATATTCCCAGTCACCTACATAGAGGTGCACAAACGACCCAGAGTAAAGAATGGATTGGATTACCCAGACCCCCCCATTGGCCAATCACCTCACCGCAGCCTCAATGCTTCCCCTCAGCTGAACCGTGTCCGTAACAACCGGCTCACCACATCCCCCCTGCCCCTCCCCCGCTCCCCCCGCCGCTCTGTATCCCCCGAGGTCCATGCCATCTCCTCTGAGTGGATCTCCCTGACCATAGGGGGTGCCAGCCCCCCCActgcccccacccctcctctacccccgcTCCCCTCTGTGTCTTACCGCTGGGGCGAGTACCTGCCCCCCTCCAAGTCTGCCAGCCCCGTGCCCCCCATCTGCGGCAGCCCCTATTGCATCTCCCCCATGgcctccccctctgcctcccccctgCCCCCGCCCTACCCGCCCCGCCCTGGCTCGGCCACCCCTTTCCTCACCTTCACCCCGCCCCAGGGGGAGGACTTCCtgctttcccctccctctcctcgtcTGTCCCGCAGCCTGAGCCCCTGTGGAGGGGCGGGCCTGGAGAGCTGGTTGACAGGGGCCAGCCCCTTGAGCATCCTGGAGAGGGAGttgatggagggggagggggcagagggagacaggggcacTGGCCGCGAAGCCCTGGGCAGCTGGCGAAATAGCCCTGCAGAGCTGCTGAAGAATGACAGTGACTACCATGGAAGAACCTCCAGAAGCCCTGTCATGTTGTTTGACATCCAGGACAACAACATGAATGCTAACTCATTCACGCAACCCCAGTCCCACAGCAGCAGCCCGGAGCCAAGCCGTCTCAGCTGTGGAATTTTCCAGGCTTTGTACAGTTACGTGCCACAGAATGAAGATGAGCTGGAGCTGCAGGAGGGAGATCTTGTCAGTGTCATGGAGAAGTGCGATGATGGCTGGTTTGTTGGTACCTCGAAGAGGACAAAACAGTTTGGCACGTTTCCAGGAAATTACGTAAAAGAGGTCAACTTATAACCTGCCAGCAAACATTTATAGTGTGAGGAGAACCTAGCTCTAACCCTTGGTTGCCTGTTGAGTGTTGGGAAATAATTACTATTATGCTTGACTCTTTAAATTAGGACAGTTATTTAGTCAAGTGAATACGTTTGTCTAATGTAAGTGATCAGTTTGGTCTGAGGTATGTTAAGGTGCATGAGGTGACAATAGGAGAAAGCTAGCTGTTGACCCTCTGCCCAATCGTCAGTGTGGTGTACACATACCCTAACCACGTCCTGCACAGTACATGGCTGAATTTATCATATGATATTCTAACAATGGAATTTTTAGTAAAACAATTCAATGTCACACACTGcagcatacactgagtgtacaaaacattaggaacaccttcctaatattgagttgcacccccctttaccctcaaaacagcctcaattcatcggggcatggactcaaagtgtcaaaagcgttccacaggaatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2097216 lncRNA downstream 31187 12553846 ~ 12554124 (-) True G1831096
TU2097215 lncRNA downstream 31581 12553381 ~ 12553730 (-) True G1831095
TU2097213 lncRNA downstream 32712 12552381 ~ 12552599 (-) True G1831093
TU2097212 lncRNA downstream 34155 12550917 ~ 12551156 (-) True G1831092
TU2097208 lncRNA downstream 39106 12545711 ~ 12546205 (-) True G1831088
TU2097266 lncRNA upstream 42913 12694296 ~ 12694586 (-) True G1831142
TU2097279 lncRNA upstream 50188 12701571 ~ 12706584 (-) True G1831155
TU2097411 lncRNA upstream 70643 12722026 ~ 12722262 (-) True G1831284
TU2097433 lncRNA upstream 103483 12754866 ~ 12755151 (-) True G1831302
TU2097456 lncRNA upstream 133736 12785119 ~ 12785339 (-) True G1831325
XM_036960640.1 mRNA downstream 8981 12560405 ~ 12576330 (-) True LOC110502273
XM_021580180.2 mRNA downstream 10108 12560405 ~ 12575203 (-) False LOC110502273
XM_021580178.2 mRNA downstream 55793 12511375 ~ 12529518 (-) True LOC110502271
XM_021580177.2 mRNA downstream 60124 12511375 ~ 12525187 (-) False LOC110502271
XM_036960345.1 mRNA downstream 142109 12413909 ~ 12443202 (-) True LOC110502270
XM_021580182.2 mRNA upstream 2493 12653876 ~ 12687536 (-) False pik3ap1
XM_036960130.1 mRNA upstream 2493 12653876 ~ 12687537 (-) False pik3ap1
XM_036960131.1 mRNA upstream 2493 12653876 ~ 12687537 (-) False pik3ap1
XM_036960129.1 mRNA upstream 2493 12653876 ~ 12687538 (-) True pik3ap1
XM_036960412.1 mRNA upstream 392973 13044356 ~ 13049486 (-) False LOC110502279
TU2096928 other downstream 189664 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 631678 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 631678 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 782180 11800683 ~ 11803131 (-) False LOC118943913
TU2095870 other downstream 851385 11733430 ~ 11733926 (-) True G1829918
TU2099870 other upstream 1868966 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 2514826 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 2847371 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 3014820 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 3094255 15745638 ~ 15747735 (-) True G1835092

Expression Profile