RNA id: XM_021580193.2


Basic Information

Item Value
RNA id XM_021580193.2
length 2204
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110502279
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13044356 ~ 13049486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAAATGTTCTGAAGATCTGGTTCTGAACGAATCCGTTCCGTTTTGCTCGAGTCCGCCTCTCTGTGCCTGTTCCTATTGACGCACTTAAAGACTCTTCCCTCAACCTTAAGGCGAGTAGCAGCGACCAATCACCATGCCATTACAGGCTTCAGAGGAAGCTGTTTATGTGACTCCAGCGCTAATTAGGCTCATGAACTAACAAATCGCTTGCACAACTGTGAGGAACCGATCACATCCATGGATTGTCTGGCGCAGTCGACCACCTTTATGGCTATTAATTGATTTGTTGTTACTTTGGCTTCTATTCTTGCTGCACTCTTTGCTCCAAAGTTATTTATGCTGACAAACTTTCTCGGTGTGGAGTAGTAGCCTATTTTTTACGAAGAACGCCTGCACCTCTTAAATTCTAAACTGGGGAATCTTGACTATCAAACCATGTTTCAACCTACACCGAAGAGGTGTTTTACCATAGAATCGTTGGTAGCGAAGGATAATCCTCTACCAGTTTCGAGGTCTGAGGAACCCATACGACCAGCGGCTCTGAGCTATGCAAACTCCAGCCAGATGAATCCATTTCTGAACGGGTTTCATTCCAGCGGCAGGGGCGTCTACTCTAATCCGGACTTGGTGTTTGCTGAGGCGGTCTCACATCATAACAACTCCGGTGTCCCAGTTCATTCGGTGCCTCCTCCACACGCTTTGGCTCACCCACTTTCGTCCTCGCATAGTCCGCACCCTCTTTTTGCCAGCCAGCAAAGGGACCCCTCTACTTTTTACCCATGGCTAATACATAGATATAGGTACTTGGGTCACAGATTCCAAGGTAACGAAACAAGCCCGGAGAGCTTCCTTTTGCACAATGCACTGGCCAGAAAGCCCAAAAGAATTCGGACAGCTTTTTCACCTTCGCAACTTCTGCGGCTTGAGCACGCATTTGAAAAAAACCATTACGTCGTAGGTGCAGAACGAAAACAGCTTGCGCACACCCTTAGCCTCACAGAAACTCAGGTAAAAGTGTGGTTTCAGAACCGAAGAACCAAGTTCAAACGGCAAAAGTTGGAGGAGGAGGGTTCAGATTCGCAACAGAAGAAGAAGGGGACCCATCACATAAACCGATGGAGACTTGCAACAAAACAAGGATCGGGAAGTCCCGAGGAAATTGACGTCACTTCAGACGATTAAAATAGCCTACTAAATTGTTTGAACCTGTGACAGCCGCGTGGCGTGAAGTATGACGTGGCTAAGGATGCTGTGTACAGGGAGAGGGTTAAGCTAATGTCACATTTCGATTCTTCGGAGATCGGCAGCTGAGGGTGAGAGAATTCAGATTGGTGGCACTGCTGTCACCATGGGTCTGTCAATACGTATCAAATTGCCCAGGCGAAAGTGATCGACAGTATCGCAGTCCACTTACCTGTCCCCCTTCCACGCACCAACCCACCACTACAATCTCCCACGAACCTCCCAAAAATGAATCTCCAATTCACATTGGAAATTTGCACTTCTGAAAGTTTCTAAATATGAACGTTTCCACTCAAGATACCAAAATACAAAACTGTTTTTGTAAAACTTGAATTGCATGGACTTTCTGGTAGTTGTTataatttgattatttttttcAAAACACAACTTTGTTTTTACTCAATCTCAGAGATGTTGTGCTTCTTCCTTTTTACAAAGTGTGCAGTCTTTTAATTAATGATTATCGTGTTAAAGTGATTGTGCAAACAGTATGAAGTAGCAGTGCTGCGTTAGTGTTTTTAAAGAAAACACAAATGGAAATGAATTTCGAAAACTTTATAAAAGTTTATCAAACCACATATGAAGTACTTAAAGGGAAAGTATCCAAGACACTCCTTAAACCCAAGCTTTACCATGGCTCTGTTATTCTGGCCCGAGCATATTGTCAGGACTTGACCCTCCCGTGAGAGTTGCCACGAAGGACTAATGCAAGAATTGACAGCCATAGAGGCGAGAGAACTTCAAGCACTGAGCGTTTCCATGTACAGAGATAGTCCAACAaaaagttaatgtttctgttaaACCCTCTTTTACCAGAATGTACATAATTTTGTGTTTGTGTTAAGTTTGCTACAATTTTAACACAAATTATACTTCCAAGAAGTATGTAATTGTCAATATTTTGTCAATAAAGTTTTATCAATATGTTGCGCGCAGAGTAAAAGTAGGCCTAATGGTTTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09317 EMX; homeobox protein EMX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2097608 lncRNA downstream 66136 12978002 ~ 12978226 (-) True G1831475
TU2097577 lncRNA downstream 86171 12957980 ~ 12958191 (-) True G1831444
TU2097521 lncRNA downstream 136374 12907782 ~ 12907988 (-) True G1831388
TU2097472 lncRNA downstream 223597 12820468 ~ 12820765 (-) True G1831340
TU2097471 lncRNA downstream 224144 12819917 ~ 12820218 (-) True G1831339
TU2098556 lncRNA upstream 16437 13065910 ~ 13066142 (-) True G1832329
TU2098576 lncRNA upstream 124718 13174191 ~ 13178346 (-) True G1832348
TU2098593 lncRNA upstream 133743 13183216 ~ 13183839 (-) True G1832362
TU2098616 lncRNA upstream 180548 13230021 ~ 13239763 (-) True G1832384
TU2098675 lncRNA upstream 290089 13339562 ~ 13342191 (-) True G1832439
XM_036960129.1 mRNA downstream 356824 12653876 ~ 12687538 (-) True pik3ap1
XM_036960130.1 mRNA downstream 356825 12653876 ~ 12687537 (-) False pik3ap1
XM_036960131.1 mRNA downstream 356825 12653876 ~ 12687537 (-) False pik3ap1
XM_021580182.2 mRNA downstream 356826 12653876 ~ 12687536 (-) False pik3ap1
XM_036960650.1 mRNA downstream 405693 12585312 ~ 12638669 (-) False LOC110502275
XM_021580194.2 mRNA upstream 18362 13067835 ~ 13084070 (-) False LOC110502281
XM_021580195.2 mRNA upstream 18362 13067835 ~ 13084070 (-) False LOC110502281
XM_021580196.2 mRNA upstream 18362 13067835 ~ 13084070 (-) False LOC110502281
XM_021580197.2 mRNA upstream 18362 13067835 ~ 13084070 (-) False LOC110502281
XM_021580199.2 mRNA upstream 18362 13067835 ~ 13084070 (-) False LOC110502281
TU2097183 other downstream 454662 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 648715 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 1090729 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 1090729 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 1241231 11800683 ~ 11803131 (-) False LOC118943913
TU2099870 other upstream 1470876 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 2116736 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 2449281 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 2616730 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 2696165 15745638 ~ 15747735 (-) True G1835092

Expression Profile