RNA id: XM_021580200.2


Basic Information

Item Value
RNA id XM_021580200.2
length 4253
RNA type mRNA
GC content 0.56
exon number 22
gene id LOC110502281
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13067835 ~ 13084070 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACATACGGGAACCTTTGTCGTCACTGATGTGGGCCGTTCACGTGGTTCATTCCTTTCCTAGGAGCTTGTCGGAACGGGTGAATGCCTGGCGCGGATGGACCGGTGAAATTAGTCAAATTCACCCAAAACAACCTTCTCTTCATTCCGCGAGAAAGTCAGAAAAATGCCGGCATATTTCCAACGACCGGAGAATGCTCTCAAACGAGCAAATGAGTTTTTGGAGGTGGGCAAAAAGCAGCCAGCTTTGGATGTTTTGTACGATGTCATTAAGAGCAAAAAGCATCGAACATGGCAGAAGATCCACGAGCCCATCATGCTCAAGTACCTGGAGCTCTGCGTGGACCTGCGCAAGAGCCACCTGGCCAAGGAGGGCCTATACCAGTACAAGAACATCTGCCAGCAGGTGAACATCAAATCCCTCGAGGATGTGGTTCGAGCCTACCTGAAGTTGGCCGAGGAGAAGACGGAGACAGCCAAGGGGGAGTCGCAGCAGATGGTCCTGGACATTGAGGATCTTGACAACATCCAGACTCCTGAGAGTGTACTTCTGAGTGCTGTGAGTGGTGAAGACACCCAGGATCGTACAGACCGTCTGCTGCTCACTCCCTGGGTGAAATTTCTGTGGGAATCCTACCGCCAATGCCTGGACTTGCTGCGTAACAACTCCAAGGTGGAGCGCCTCTACCATGACATTGCCCAACAAGCTTTCAAGTTCTGCCTTCAGTACACCCGTAAGGCAGAGTTCCGGAAGCTTTGTGACAATCTGCGCATGCACCTGGGTCAGATCCAGCGCCACCACAACCAGAGCACAGCCATCAACTTGAACAACCCTGAGAGCCAGTCTATGCACCTGGAGACACGCCTGGTGCAACTGGACAGTGCCATTGCCATGGAGCTCTGGCAGGAAGCTTTCAAGGCTGTGGAAGACATCCATGGTCTCTTCGCCCTTTCCAAGAAGCCCCCCAAGCCTCAACTTATGGCCAACTACTACAACAAGGTGTCCACTGTGTTTTGGAAGTCTGGGAATGCCCTGTTCCACGCCTGCACCCTCCATCGCCTCTACCATCTTTCCAGGGAGATGCGCAAGAACCTCACCCAGGAAGAGATGCAGAGGATGTCCACAAGGGTCCTCCTGGCCACCCTGTCCATTCCCATCACCCCGGAACGCACAGACATTGCCCGCCTGTTGGACATGGACGGCATAATCGTGGAGAAACACCGTAGGCTGGCCACACTACTGGGCCTGCAGTCCCCACCAACCCGCCAGAGCCTCATCAATGACATGGTTCGGTTCAACTTGCTGCAGTACATTGTACCTGAAGTGAAGGAGCTGTACAATTGGCTGGAGATGGACTTCCACCCACTGAAGCTGAGCGGAAGAGTAACAAAGGTGTTGAACTGGGTGAGAGACCAGTCTGAGAAGGAGGCGGACCTCCAGCAATATGTTCCCCACCTGCAGAGTAACACCATCCTCAGGCTGCTGCAGCAGGTGGCTCAGATCTATCAAAGCATTGAGTTCAACCGTCTGGCCTCCCTGGTTCCATTTGTGGATCCCTTCCAATTGGAGCGCTCCATTGTGGATGCTGCCCGACACTGCGATCTGCAGGTTCGAATTGACCATACCACTCGGAACCTGAGCTTTGGTTCGGACCTGAATTACTCGACCAAAGAGGACTCTCCCGTGGGGCCGTTCTTGCAGAACATGCCCTCTGCCCAGATCAGGAACCAGCTGACAGCAATGTCGTCTTCCTTGGCCAAAGCAATCCAGGTCATCAAGCCTGCGTCCATGCTGAAAGAGCGCGAGGAGCAGAGCCAGCTAGCCATCACCGCCTACCTGAAGAACGGCCGCAAGGAGCACCAGCGCATCCTGGCCCGCCGGCAGACCATCGAGGAGCGCAAGGAGCGCTTGGAGAACCTCAACATCCAGCGGGAGAAAGAGGAGCTGGAGCAGCGCGAGGCGGAGCTGCAGAAGGTGCGCAAGGCAGAGGAGGAGCGCCTGCGCCAGGAGGCCAAGGAACGCGAGAAGGAGCGCATCATGCAGGAGCACGAGCAGATAAAGAAAAAGACTGTGCGCGAGCGGCTGGAGCAGATAAAGAAGACTGAACTGGGAGCCAAGGCCTTCAAAGACATCGATATAGAGGACCTTGAGGACCTGGACCCTGACTTCATCATGTCCAAACAGGTGGAGCAGcttgagaaggagaagagagagcttcAGGACCGCCTGAAGAACCAGGAGAAAAAGATTGACTACTTTGAGAGGGCCAAACGTCTGGAGGAGATCCCCTTGATCAAGAAGGCCTACGAGGAGCAGCGTGTCAAGGACATGGAGTTATGGGAGCTCCAAGAGGAGGAGCGGATCAGCAACATGAAGGTGGAGCGTGAGAGGGCCTTGGAGCACAAGCAAAGGATGTCCAGAATGATGGAGGACAAGGAGAACTTTGTGGGCAAAATAACAGATGCTCGAAGCTTCATCTACGAGGAAAAACTGAAACAGTTCCAGGAGCgcctggtggaggagaggaagaagcgtCTAGAGGAGAGGAAGATCCACCGCAAGGAGGACCGTCGCAACACCTTCCACCGCCAGAAGGAGGAGGAGGCCCAGCGCATCCACGAGGAGCAGCTCAAGAAAGAGCGCGAGGAGCGCGAGCGCATCGAGCAGGAAGCACGCGAGGCAGAGGAGGCGGAGTACCAGGAGCGCCTGCGCAAActagaggagcaggagaggaagcAGCGAGCCCGGCAGCAGGAGATCGAGGAGCGCGAGCGCcgcagggaggaggagatgagggccccTGCCAGGTCTGAGGAGAAACCCAGAGGAGAAGCGAAGGACTGGGGTGCTGAGAAGGAGGAGGGcggtggaggatggaggaggcgTACTGAGGTTGAATCGGAGAGGCGTCGCCCTGTGCCTGATAAggaCTGGAGAGCCGATGGCGGcgaggacaaagacagagagccaccctccaggagaggaggagacggcCCTCGCCGTGGTGGGGCCGACGACCGTGGACCCCCACGCAGGGGCTTTGGGGATGACGACCGCCCCCTGCGCAGAGGCATGGACGAGGACCGTCCACCAAGGAGAACCTTTGGGGATGATGACCGGGGTCTTAGAAGGGGGGGGGACGAGGACCGCGCTCCCCGCAGAGGCTTCGATGATGGCCCCAGGCGTGGCTTTGACGAAGACAGAGGTCCTCGCCGTGGCTTTGACGACGGCCCCCGCAGAGGCACGGACGAGTCTAGGGCCCCCAGACGCGGGGCTGATGATGACACCTGGGGccccaggagaggaggagatgacgaAAGGGGCGGGCCCCGTGACGACAAGCCATGGAAGCCAGCTGGCCGGCCCGGTGGTGGCTGGCGTGAGAGGGAGAAGGCCCGCGAGGAGAGCTGGGGTCCACCCCGCGAAGGTAGCAGCAGCAAGGAGGGCGAAGAGGTcgagagagaggaaaaacagGAGAGCGAACGCTTCCCTGAGCGCCGCCCACCCAGggaggagggaggtggtggtggtgcttgGAGAAGGCCGGGTGCTGATGATGAGGTGCCCAAGAAAAGCTGGAGAGACTCTGCTCGTCAGGAAGAGCCTGACCGCGAGGATCGCCCTCCTATCCGTCGAGAGCGACCTGAGCGCAGGGATGACCGTGACCGTCCCCCACCCAGCAGAGAACCTGAAGAAGGAGGAGGCTCTTGGCGCCGTGCCGGCGACGAGAAGCGTGATGTGCGTAAAGAGGAACGTCCGGCTCCCCCCAGACCCAGAGAGAGTGAGCGTGAAGCGGACGGAGAGAAGAGCTCCTGGCGCTctgagaaagacaaagagaacgCTGGTCGCGCCAAGAAGACCAACGAAGAGACCGACGATGACGGCTGGACCACTGTTGCCCGCCGCTGAGTCCACCCTCTCTCTGAGCATCTGCTTCCAATTGGCCCCACAATGACTGTTGTACACCTCTATTGCTGCCAGCCTCCTAGTAATTTTACCATGGCATAAGCTTGTCATCTCATCAATGATCTCTATTGCCATTGAATATGTATTTTGCTAAAATTAAGGTTGCTTCTTAACCTAAAAACTAGTTAATTCCCATTTTGATGTGCATGCTTAGAGTATACAATTAGTCTCACTTAATATCTAGTGTGTGGTTATATCTTAAAGCATTCAACCATATTTAACACAATGAGTTGCATGTTTATAGATAAATACGGCCTTTATTAATAAAGTACTTTGCTCAACAGTT

Function

GO: NA

KEGG:

id description
K03254 EIF3A; translation initiation factor 3 subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2098556 lncRNA downstream 1693 13065910 ~ 13066142 (-) True G1832329
TU2097608 lncRNA downstream 89609 12978002 ~ 12978226 (-) True G1831475
TU2097577 lncRNA downstream 109644 12957980 ~ 12958191 (-) True G1831444
TU2097521 lncRNA downstream 159847 12907782 ~ 12907988 (-) True G1831388
TU2097472 lncRNA downstream 247070 12820468 ~ 12820765 (-) True G1831340
TU2098576 lncRNA upstream 90121 13174191 ~ 13178346 (-) True G1832348
TU2098593 lncRNA upstream 99146 13183216 ~ 13183839 (-) True G1832362
TU2098616 lncRNA upstream 145951 13230021 ~ 13239763 (-) True G1832384
TU2098675 lncRNA upstream 255492 13339562 ~ 13342191 (-) True G1832439
TU2098708 lncRNA upstream 297318 13381388 ~ 13381633 (-) True G1832472
XM_036960412.1 mRNA downstream 18349 13044356 ~ 13049486 (-) False LOC110502279
XM_021580193.2 mRNA downstream 18362 13044362 ~ 13049473 (-) True LOC110502279
XM_036960129.1 mRNA downstream 380297 12653876 ~ 12687538 (-) True pik3ap1
XM_036960130.1 mRNA downstream 380298 12653876 ~ 12687537 (-) False pik3ap1
XM_036960131.1 mRNA downstream 380298 12653876 ~ 12687537 (-) False pik3ap1
XM_021580205.2 mRNA upstream 15097 13099167 ~ 13116030 (-) True sfxn4
XM_021580206.2 mRNA upstream 39352 13123422 ~ 13146350 (-) False LOC110502284
XM_021580207.2 mRNA upstream 52618 13136688 ~ 13146350 (-) True LOC110502284
XM_021580212.2 mRNA upstream 64757 13148827 ~ 13167879 (-) False LOC110502288
XM_036959707.1 mRNA upstream 64757 13148827 ~ 13167879 (-) False LOC110502288
TU2097183 other downstream 478135 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 672188 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 1114202 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 1114202 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 1264704 11800683 ~ 11803131 (-) False LOC118943913
TU2099870 other upstream 1436279 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 2082139 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 2414684 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 2582133 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 2661568 15745638 ~ 15747735 (-) True G1835092

Expression Profile