RNA id: XM_021580207.2


Basic Information

Item Value
RNA id XM_021580207.2
length 1765
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110502284
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13123422 ~ 13146350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGTGAGGCATTTCTAATACTTACAATCGGATGACGTGGCTGAAAGTTGCGGACAGCGTAGAAACCGGAGTTCCATTATTCAACGGATTGTTCACCGTCttcgatttgatttgagattACAAGCCATGTGACATGTCTGCATCAATCACAAGTGAATGCGATGCGAGTGAGGCAATTTACGCCATATGCGTACGAGAGCATCCAGAAAAACTGCCACTGTCGTACAACCAGGAAGAAGGTGGGATAGCACTAACAGAGCTAACATCCCAAATCTGCAAACTTTCCCAGAAAATGATGGGGTCTTCCAGGTGGAAGATTGCAGTGGTGGTCTTTCTCTCGGTTGCCGAGATGTTAATGCCGATTGAGGCAGATGAACACGAACACACGTACACAGATAAAGAGGAGGTGGTTTTATGGATGAATACAGTGGGGCCTTACCACAACAGACAAGAAACGTACAAGTACTTCTCCCTGCCCTTCTGCGTGGGCACCAAAAAGACCATTAGCCACTACCATGAGACATTAGGAGAGGCTCTGCAAGGAGTCGAGCTGGAGTTCAGTGGCCTAGACATTAAGTTCAAAGATGAAGTCATGCAAACAACATACTGTGAAATCGAGTTGGACAAAGCCAAACGGGATGCCTTTGTATATGCCATTAAAAACCACTATTGGTACCAAATGTACATTGATGACCTACCTATCTGGGGAATTGTTGGCGAGGCAGATGAAAACGGAGAGGATCATTATCTGTGGACTTACAAGAAATTGGAGATCGGCTTCAATGGCAACCGAATTGTTGATGTCAACCTGACAAGTGAAGGCAAAGTCAAGCTTGTGCCTAACACACGAATTGCAATGTCGTACTCAGTAAAGTGGAAGAAGTCAGATGTGAAGTTTGAAGACCGATTTGACAAGTATCTTGATCCATCTTTTTTCCAACACAGAATTCACTGGTTTTCCATCTTCAATTCCTTCATGATGGTTATCTTCTTGGTTGGCCTGGTGTCCATGATCCTGATGAGAACTTTAAGGAAGGACTATGCTAGATACAGCAAAGAGGAGGAAATGGATGACATGGACAGGGACCTGGGAGATGAGTATGGGTGGAAGCAGGTCCATGGAGACGTGTTCCGGCCGTCCAGCCACCCAATGATCTTCTCCTCTCTTATTGGCTCTGGATGCCAGATCTTCTCGGTCTCGTTCATCGTCATCGTCGTGGCCATGATTGAGGATCTGTACACCGAGAGAGGATCCATGCTGAGCACAGCCATCTTTGTGTATGCTGCCACCTCTCCTGTCAATGGCTATTTTGGCGGAAGTTTGTATGCAAAACAAGGAGGCAGACGATGGATTAAACAGATGTTTATCGGGGCCTTCCTGATCCCTGCCATGGTGTGTGGGACAGCCTTCTTCATCAACTTCATCGCCATGTACTACCATGCCTCCCGAGCCATCCCTTTTGGCACAATGGTGGCTGTTTGctgcatttgtttgtttgttatccTGCCACTCAACCTTGTGGGGACCATTCTGGGAAGAAACCTCTCTGGCCAGCCCAACTTTCCGTGTCGAGTCAATGCAGTGCCGCGGCCAATCCCTGAGAAGAAATGGTTGAAACCAGTCCTGGATTACCAGAGGAATGAAAACCGTGCTGAGGCCTGGAGTTGCATAGCTCTGATTGATTGGTAAACtattggtgacactgtctgtattGTGAGTTGATTGTAAATGTATAACATTTTCCAGGTTCATGGAGCCAGCTGT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2098556 lncRNA downstream 70546 13065910 ~ 13066142 (-) True G1832329
TU2097608 lncRNA downstream 158462 12978002 ~ 12978226 (-) True G1831475
TU2097577 lncRNA downstream 178497 12957980 ~ 12958191 (-) True G1831444
TU2097521 lncRNA downstream 228700 12907782 ~ 12907988 (-) True G1831388
TU2097472 lncRNA downstream 315923 12820468 ~ 12820765 (-) True G1831340
TU2098576 lncRNA upstream 27841 13174191 ~ 13178346 (-) True G1832348
TU2098593 lncRNA upstream 36866 13183216 ~ 13183839 (-) True G1832362
TU2098616 lncRNA upstream 83671 13230021 ~ 13239763 (-) True G1832384
TU2098675 lncRNA upstream 193212 13339562 ~ 13342191 (-) True G1832439
TU2098708 lncRNA upstream 235038 13381388 ~ 13381633 (-) True G1832472
XM_021580205.2 mRNA downstream 20658 13099167 ~ 13116030 (-) True sfxn4
XM_021580196.2 mRNA downstream 52618 13067835 ~ 13084070 (-) False LOC110502281
XM_021580212.2 mRNA upstream 2477 13148827 ~ 13167879 (-) False LOC110502288
XM_036959707.1 mRNA upstream 2477 13148827 ~ 13167879 (-) False LOC110502288
XM_021580213.2 mRNA upstream 2482 13148832 ~ 13163681 (-) True LOC110502288
XR_002470311.2 mRNA upstream 22796 13169146 ~ 13197193 (-) False mocos
XM_021580209.2 mRNA upstream 32393 13178743 ~ 13197192 (-) False mocos
TU2097183 other downstream 546988 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 741041 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 1183055 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 1183055 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 1333557 11800683 ~ 11803131 (-) False LOC118943913
TU2099870 other upstream 1373999 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 2019859 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 2352404 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 2519853 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 2599288 15745638 ~ 15747735 (-) True G1835092

Expression Profile