RNA id: XM_021580212.2


Basic Information

Item Value
RNA id XM_021580212.2
length 1909
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC110502288
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13148827 ~ 13167879 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGATGATTCGCTCATCCCTATTGACCAGGAGATGAGCCAAGCCACCCCACCTCGCTACCTCCGAGACCTCTTGAtgCCTTTATCTCCTCTGAGGACCCAGTGAGGCTGGAGCTCAATCAGAGAGCTGTTGAGGGACTGGTTAGGAAGAACACTTCTACAGACAGTGAGGGGCAGTCAAGAAATGGAATGGCAAGGCCACAGAATATGACATACGCAGACCACCTCGTGCATGCTCCTAGTAGAGCGGGGTGTGGTGtttacccagtggtgtaaagtacttaaATGCAGAGGACTGGTGGCTCGGTTAGTAAACGTCtcaggatgaggaagaggaccgGTGACCATGATTCCGAGGAGCAGAAGACTGATGGAAATAAAACTAAGGTGTCATTGAGTGCGCAGCCGAGaccTAGCCCCCATTTGTTGTGGTGGTTCAAAAGAGGTCTCCTGGCTGTATGTGTCATTTATGTTTCTGTGCCTTTCATGATGCCACTGTCTCCTGACATCATAAAGCACCTGGTTTATTCTCACAGAGTCAGGGTCCCATTCTTCGTCGACCATAGCCAGCCAGCCGACCTGTCTCTTAACCACACAATGAACATGTACCTTACATCCGAACAAGGGATCTCATTGGGCGTATGGCACACAGTCCCTGAACGCCAGTGGAAAGAGGCACAGGGAAAGGACTTGGAATGGTACCAAGATTCTTTGGGAGCTGGAAATCCGATCATCATTTATCTCCATGGCAATGGAGGCACAAGGGCAGAAAGTCACCGTGTGGGAGTAATAAATCTACTGAGTGCAATGGATTACCATGTTTTGGCTTTGGACTACAGAGGTTTTGGGGACTCCACCGGAGAGCCCACTGAAGTTGGTATTACCACTGACACCCTCTACTTGTACCAGTGGGTAAAAGCCCGCAGTGGGAGCAGTCTGGTGGTATTATGGGGACACTCCCTTGGCACTGGAGTGGCCACTAATACTGCAGTCAAACTAATGGAACATGGGGTTGTTGTTGATGGTGTGATCATTGAGGGAGCATACACCAACATTCGACAGAAGGGTGCTCATGATCCATTTGGCTGGTTTTATTGGAAGTTCCCAGGTTTTGAGTACTTTTTCCTGGACACAATGGCAGAATACAATATAATCTTCCCTAATGACGAAAACTTGAAGAGGATGAGGAGTCCTCTTCTGATACTTCATGCAGAGGATGACCACGTAGTGCCTATCCACATGGCTCAGCAGCTGTATGAAATTGCACAGAGTGCCCAAAACTCAGAGAATCGAGTAAAGATGGTACCGTTCGCCAGATCCCTTGGGTACCTTCACAATGGATTGTACAAAGACCCTCACATGCCCAACATTATTGGGGAATTTGTACATTCGTTGCCCCCCTAATCCAGTGACCTATGCAGAAGAACCTTTGGACATCAACTGTTTCAACATATCTAGAGAACTGCAAAACCTAGATGCACAGTTTGCATGTCTCTTTACCTTATGGCAAATCAGTAGGGTGGACTTCAATCACATGGTCCAATCATTGATCTAATATCAGATAGAAGTTACATTGCCAGTAATGTAAAAGCACTTACTTAGCTGAAAGGactgagaaaaaaaaagagaatctATGAGGTTCAGCTCTGGGTTTAGCACTTACTGAGATGTCCAATGCATTATTATCTAGCTATAGTCTTAGTCTATGTGCAAATTACAGAACTTTTGAGATGGAGGCAATGCATTGGTTTCCTTTCTATGAATTATAAATGTGAAAAATGATTATTAATCAATGTTTAAAGTGTTCAAGCTCAGGTGAATTCTTAGTAGTGATTACAGAAAAGTTACTGCTGTAAAAGCTTTTCTTCTTGGCAAGTATTAcattacaaataaaatgtgatcaACATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2098556 lncRNA downstream 82685 13065910 ~ 13066142 (-) True G1832329
TU2097608 lncRNA downstream 170601 12978002 ~ 12978226 (-) True G1831475
TU2097577 lncRNA downstream 190636 12957980 ~ 12958191 (-) True G1831444
TU2097521 lncRNA downstream 240839 12907782 ~ 12907988 (-) True G1831388
TU2097472 lncRNA downstream 328062 12820468 ~ 12820765 (-) True G1831340
TU2098576 lncRNA upstream 6312 13174191 ~ 13178346 (-) True G1832348
TU2098593 lncRNA upstream 15337 13183216 ~ 13183839 (-) True G1832362
TU2098616 lncRNA upstream 62142 13230021 ~ 13239763 (-) True G1832384
TU2098675 lncRNA upstream 171683 13339562 ~ 13342191 (-) True G1832439
TU2098708 lncRNA upstream 213509 13381388 ~ 13381633 (-) True G1832472
XM_021580206.2 mRNA downstream 2477 13123422 ~ 13146350 (-) False LOC110502284
XM_021580207.2 mRNA downstream 2477 13136688 ~ 13146350 (-) True LOC110502284
XM_021580205.2 mRNA downstream 32797 13099167 ~ 13116030 (-) True sfxn4
XM_021580196.2 mRNA downstream 64757 13067835 ~ 13084070 (-) False LOC110502281
XR_002470311.2 mRNA upstream 1267 13169146 ~ 13197193 (-) False mocos
XM_021580209.2 mRNA upstream 10864 13178743 ~ 13197192 (-) False mocos
XM_021580210.2 mRNA upstream 10864 13178743 ~ 13197192 (-) True mocos
XM_021580217.2 mRNA upstream 183467 13351346 ~ 13361102 (-) True fignl1
XM_021580219.2 mRNA upstream 235668 13403547 ~ 13405114 (-) True LOC110502296
TU2097183 other downstream 559127 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 753180 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 1195194 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 1195194 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 1345696 11800683 ~ 11803131 (-) False LOC118943913
TU2099870 other upstream 1352470 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 1998330 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 2330875 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 2498324 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 2577759 15745638 ~ 15747735 (-) True G1835092

Expression Profile