RNA id: TCONS_00051832


Basic Information

Item Value
RNA id TCONS_00051832
length 645
lncRNA type retained_intron
GC content 0.45
exon number 5
gene id XLOC_026604
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36441306 ~ 36458165 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGGATCTGAAGAAGCCGAGAGGCAAAAAATGTTTCTTCGTCAAGTTTTTTGGAACTGAAGATCATGCCTGGATAAAGGTAGAGCAGCTGAAGCCTTACCACCCCCACAAAGAGGAGATGATCAAGATAAACAAAGGCAAGCGCTTCCAACAGGCTGTTGATGCGGTTGAGGAGTATCTAAAGAAGGCCAAGGGGAAAGATCAGtcaCACTCTGATGACAAAAGCAAGTCTGATAAAGGTCGGAAAGCAGCTAAACCAATGAAGATCAttgaagaggatgatgaagatgccTTTAAGGGTGGCTCATCAGATAAGTCCTATGAAAAGACCATTTGATGTTGCACCTGCTTTGGAGTCAGGTTACAGTTTTTCAAGCGGGACCCACCCCACAGTGTGACCAGCGTATCCGTCTGTCAGAATTTTGCCTGGGTTGCAATGCTGCTTTTTAAGGCTTTGTTTAATGAGATAAAGCCATTCTGTACACATGGTGAATGTGTCTCTTTTTCACTTAAGGAACAGACTGATTCTGACCCAGAGCCATCCTCTGTTCAACGGCTGGTCGCTGGAACAGTGTCAGGATTCAAATGGGATAGCAGTCCAGTAAAGGATGACCCACATTTTCATCACTTTCTGCTCAGCCAGTC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050661 NADP binding molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041121-5 Predicted to enable methylated histone binding activity. Predicted to be located in nucleus. Orthologous to human GLYR1 (glyoxylate reductase 1 homolog).

Ensembl:

ensembl_id ENSDART00000165240

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051828 lncRNA downstream 10948 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051826 lncRNA downstream 13109 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00051827 lncRNA downstream 13284 36430945 ~ 36438351 (-) False XLOC_026603
TCONS_00053070 lncRNA downstream 128010 36320239 ~ 36323625 (-) True XLOC_026600
TCONS_00051807 lncRNA downstream 336344 36093640 ~ 36115291 (-) True XLOC_026592
TCONS_00053071 lncRNA upstream 125792 36583100 ~ 36587136 (-) True XLOC_026606
TCONS_00052478 lncRNA upstream 153026 36610334 ~ 36611024 (-) True XLOC_026609
TCONS_00053072 lncRNA upstream 496317 36953625 ~ 36954088 (-) True XLOC_026617
TCONS_00053073 lncRNA upstream 512095 36969403 ~ 36972222 (-) True XLOC_026619
TCONS_00051861 lncRNA upstream 679110 37136418 ~ 37143881 (-) True XLOC_026622
TCONS_00051825 mRNA downstream 10930 36427988 ~ 36440705 (-) False XLOC_026603
TCONS_00051823 mRNA downstream 31238 36401105 ~ 36420397 (-) False XLOC_026602
TCONS_00051824 mRNA downstream 31994 36409593 ~ 36419641 (-) True XLOC_026602
TCONS_00051822 mRNA downstream 86732 36332579 ~ 36364903 (-) True XLOC_026601
TCONS_00051821 mRNA downstream 178965 36262593 ~ 36272670 (-) True XLOC_026599
TCONS_00051834 mRNA upstream 2482 36459790 ~ 36481986 (-) False XLOC_026605
TCONS_00051833 mRNA upstream 2482 36459790 ~ 36481986 (-) True XLOC_026605
TCONS_00051835 mRNA upstream 132119 36589427 ~ 36602069 (-) False XLOC_026607
TCONS_00051836 mRNA upstream 132169 36589477 ~ 36602500 (-) False XLOC_026607
TCONS_00051837 mRNA upstream 141218 36598526 ~ 36602379 (-) True XLOC_026607
TCONS_00051819 other downstream 204840 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 204913 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051816 other downstream 212594 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051795 other downstream 1503601 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051794 other downstream 1637666 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051846 other upstream 298725 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 510563 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051859 other upstream 618390 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051873 other upstream 1216340 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 1309977 37767285 ~ 37773800 (-) False XLOC_026629

Expression Profile

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