RNA id: TCONS_00053071


Basic Information

Item Value
RNA id TCONS_00053071
length 741
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_026606
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36583100 ~ 36587136 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTTGCTAGCcaaatcaaattttaaatattgtatgaTGATGAGCAACATTGGCCCAGCAACgtccatcaacacacacacacacagcaacattCATAATAATACATACAAAATCCCCCAAAAATCCGATCTGTGAAATGAAATCCAAAGCACACCTCACACGTTTGTTCtgactttattaaaaacattaaaagaaaGATATTTAGGCCACACATATGATGCAATCTAGTTCAATCACAGGACTACATGTCGGCATCTGTAGAGCATGTGCTgttattaacatcaacaaaccATCTGCGTAaccgtgtacacacacacacatcctcagCAAATGATTGATCGCATCttattacatattgatataattgACTGTAAGTCCTATACGGCGAGACAAAAGAGCCAAATACAGTGTGCTTATGAAAACAGTAACCTGAACCGTGGCCTTTGTTGGGCTTGAATGGGCGAATTCAGGGTGGAGCTGCAATATGACTCTGTTTCTCCATATGCTTGTGCCATGACGAACCAAATCCTGCTCAGTTTACCTGGAATATAAGAAGCTTTTAAGGCGTTTGACACGTGCGCAGAAGGATTAGTCTTTGATTAGTTTATACTACTGATGGTTGAGTGATTACTATGATACTTGTGTGGTTTTTTTCCAGTCTTCGCATTACAATTGTGATCATAACTCTATGCTTTGAGTTCAGATATTGTGGATGATCTGGTTCATCTGGAGGCTCTATTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051832 lncRNA downstream 125792 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00051828 lncRNA downstream 142413 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051826 lncRNA downstream 144574 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00051827 lncRNA downstream 144749 36430945 ~ 36438351 (-) False XLOC_026603
TCONS_00053070 lncRNA downstream 259475 36320239 ~ 36323625 (-) True XLOC_026600
TCONS_00052478 lncRNA upstream 23198 36610334 ~ 36611024 (-) True XLOC_026609
TCONS_00053072 lncRNA upstream 366489 36953625 ~ 36954088 (-) True XLOC_026617
TCONS_00053073 lncRNA upstream 382267 36969403 ~ 36972222 (-) True XLOC_026619
TCONS_00051861 lncRNA upstream 549282 37136418 ~ 37143881 (-) True XLOC_026622
TCONS_00053074 lncRNA upstream 994386 37581522 ~ 37584807 (-) True XLOC_026625
TCONS_00051834 mRNA downstream 101114 36459790 ~ 36481986 (-) False XLOC_026605
TCONS_00051833 mRNA downstream 101114 36459790 ~ 36481986 (-) True XLOC_026605
TCONS_00051829 mRNA downstream 124935 36441306 ~ 36458165 (-) False XLOC_026604
TCONS_00051830 mRNA downstream 124935 36446582 ~ 36458165 (-) False XLOC_026604
TCONS_00051831 mRNA downstream 124957 36447529 ~ 36458143 (-) False XLOC_026604
TCONS_00051835 mRNA upstream 2291 36589427 ~ 36602069 (-) False XLOC_026607
TCONS_00051836 mRNA upstream 2341 36589477 ~ 36602500 (-) False XLOC_026607
TCONS_00051837 mRNA upstream 11390 36598526 ~ 36602379 (-) True XLOC_026607
TCONS_00051838 mRNA upstream 18013 36605149 ~ 36606884 (-) True XLOC_026608
TCONS_00051839 mRNA upstream 22949 36610085 ~ 36612877 (-) False XLOC_026609
TCONS_00051819 other downstream 336305 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 336378 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051816 other downstream 344059 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051795 other downstream 1635066 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051794 other downstream 1769131 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051846 other upstream 168897 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 380735 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051859 other upstream 488562 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051873 other upstream 1086512 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 1180149 37767285 ~ 37773800 (-) False XLOC_026629