RNA id: XM_021580240.2


Basic Information

Item Value
RNA id XM_021580240.2
length 2739
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110502305
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13759653 ~ 13824191 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCATCTTGTAAACGTATGATTTCGCAGCCTCTGACGGGCTTGTTATTGTTGGTGACGAAGACCGCAACACCTCAGAGACAGGCAGTCAATGGAGTCAAGTTGTCACAGCGATGCATTAATGATAAACAAAGTATTACTTGTTTTTTAGCAAAATATTAACGTGAAACCGCAGGCGAAGCGTCGAGTAGTAATGCATTATTTAGAATGACCGCAAAGGAATTGGCTTATAGTTGAAGTTACTTTATTTCGGCTAACCAacaagctagccagccagctaaactATTCGAAGGCCTCGTCGCTTTCAACAAGGCCAAGCTAGCCAACTAACCTGCATCGTTAAACACTCAAAACGTTTTGAAGTGTTGTTTTACATTTATTGGCTATATGTCGGAAGATATCGCATTGGTAatgcaacagaatttggacaggAGCTGCTGGGTATGCTTCGCCACGGATGAGGATGACCGCACGGCGGAGTGGGTGCGTCCGTGTCGCTGCCGAGGCTCCACCAAGTGGGTGCACCAGGCATGTCTGCAGCGCTGGGTGGACGAGAAGCAGAGGGGCAACAGCACGGCCCGCGTGTCCTGTCCGCAGTGCAACGCCGAGTACCTCATCGTCTTCCCCAAGCTGGggCCAGTGGTGTATGTACTAGACCTGTTTGACCGGCTCATCTCCAAGGCCTGTCCCTTTGCCGCCGCCGGCATCATGGTGGGCTCCATCTACTGGACCGCCGTCACGTACGGGGCTGTCACTGTCATGCAGGTGGTGGGCCATAAGGAGGGCCTGGATGTGATGGAGCGGGCAGACCCCTTGTTCCTGCTCATCGGCCTGCCCACCATCCCCGTCATGCTGATCCTGGGGAAGATGATCCGCTGGGAAGACTACGTGCTGCGCCTCTGGAGGAAGTACTCCAACAAGCTGCAGATCCTCAACAGCATCTTCCCAGGTCAGAACGGACACATTGggatTGGGTGTCCGGTGCCTCGTATCCCGGCGGAGGCCAGCCCCCTGGCAGACCACGTGTCAGCCACAAGGATCCTGTGTGGTGCCCTGGTATTCCCTACCATCGCCACCATCGTGGGCAAACTCATGTTCAGCAGTGTCAACTCCAACCTGCAGAGGACCATTCTGGGTGGGATTGCGTTTGTGGCTGTCAAGGGAGCGTTCAAGGTGTACTTCAAACAGCAGCAGTACCAGAGGCAAGCCCACCGCAAGATCCTCAACTTTACCGAGGCAGAGGAGGCCTGAGAAGGGgcatggacagacagacatattgaTACACAGGGGGAGTGGACGGAGCATGACGGTGAACTCTGAGCAGGAACATTGTCGGACAGACAGATTGACGGACTTAGGGATCATTGGCGCCCCCCAAACTCTTACACCTCTCTAAGTAGCCTCGCCTCACCTCGTTCTGTTTCTGCTCTTTAGGGAGTCATCGTCGTATGCGGCTGACATTCGTGCTGTATGATTATCACCATGTTCTATTTTGTTTTTAAAACATTCAAAGGAGAAGAGACGAGACAAGAACACTGATACAGACATGCGtgcgtgcaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagagagtgctcATGTATATTCCACACAGGagctctttttttttgttgtggaaTGTGACTTGTAACTGCTATTTTGCTGTAGcaatatttgtttgttttaatcAAGTAACCAGTGCTGGTTGTACTTTAAAAAGATACATCTGGGGCACATGTAATTATTAGACAGGAAAGTTTTATAAATAATTGTCTTACTGTTAATTTTGCAGTTTTGAAATTTGCCAATGAGGAATATTGTTTCCCTGTATTGAATGCGTTTTAagagaaattagatttttttatcACTAAAGGATGATTATTTGAATGGGAAATAACTTTTTACCTGCTCCTGTTGCCACGTTTCCATTGGTAAATATCCAATATACATACTCTCAATTATTTAGAAGCACAGTACAAACATAAGTGTGATTGTCTGTACATACATTCATTGCACAATATGTATCAGCTAAAACATTCAAGggtatttttttgttgtcaaatGCCTAGAAGTGTTGTCATTAGTTCTGTTTGTAGTTGATTTTGTGTAATTGTCTTCTACTCatgagatgacagagaatgtgatgTGCAAGCCTGCAATGTGGAGGTGGGTGGATGATATAGACCTGACACGTGCCGCATTACCTTCTAAATGAGAGCATAAAATTACATGTCCACTGAATAAAGGTGAGATTTGTGTCTCTTCTTTTAACCCAAATCGCATATTCCGCCACATATTTCCTTGCTGACGCCACCACTTGCTTTGTTttttagtgtgtgtatatatatattatatatattatatatatgctCAAGGCAGTCACGTAATAACCCATTCTGTAACTACTCTTTCTTCTAAAAGTGCGGTATAAccagtatactgtacattacgTGTGTGAAAAAGGCCATAAACCAATCATTTGAATATTTAATATTATTGTGCACATCTCTTTTAGCTGTGCCTGGTAGACAGACATGCTCCAATAATCTGCTGTGGTCAACTCAGCTTTTACATTAACTCTAAAGAAAATATATTATGCCAAAAGTGACATTGAAGTTATTAATTGTATTGTACAGACATTGTTTCTCAATTTATAGTTTCGTGGTGGATTGtgaataaatgtattttttcaaA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10660 MARCH5; E3 ubiquitin-protein ligase MARCH5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2098800 lncRNA downstream 73730 13672516 ~ 13685923 (-) True G1832558
TU2098799 lncRNA downstream 80075 13672516 ~ 13679578 (-) False G1832558
TU2098833 lncRNA downstream 199264 13560090 ~ 13560389 (-) True G1832590
TU2098720 lncRNA downstream 362345 13396802 ~ 13397308 (-) True G1832483
TU2098719 lncRNA downstream 363699 13391640 ~ 13395954 (-) True G1832482
TU2099031 lncRNA upstream 51487 13875678 ~ 13877676 (-) False G1832769
TU2099032 lncRNA upstream 51487 13875678 ~ 13877676 (-) True G1832769
TU2099063 lncRNA upstream 130207 13954398 ~ 13954643 (-) True G1832798
TU2098983 lncRNA upstream 143459 13967650 ~ 14061826 (-) True LOC110502308
TU2099191 lncRNA upstream 299147 14123338 ~ 14126003 (-) True G1832918
XM_021580232.2 mRNA downstream 49604 13674463 ~ 13710049 (-) True LOC110502303
XM_021580233.2 mRNA downstream 49660 13674463 ~ 13709993 (-) False LOC110502303
XR_005039136.1 mRNA downstream 55894 13702543 ~ 13703759 (-) True LOC118943841
XM_021580225.2 mRNA downstream 210347 13488094 ~ 13549306 (-) False LOC110502298
XM_036959678.1 mRNA upstream 66807 13890998 ~ 13944823 (-) False LOC110502306
XM_036959676.1 mRNA upstream 66807 13890998 ~ 13944830 (-) True LOC110502306
XM_021580244.2 mRNA upstream 143323 13967514 ~ 13978252 (-) False LOC110502308
XM_036959888.1 mRNA upstream 143323 13967514 ~ 13979770 (-) False LOC110502308
XM_021580246.2 mRNA upstream 552045 14376236 ~ 14467063 (-) True LOC110502312
TU2097183 other downstream 1169953 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 1364006 12392963 ~ 12395647 (-) True LOC110502269
TU2096134 other downstream 1806020 11918079 ~ 11953633 (-) False LOC110502234
TU2096135 other downstream 1806020 11918171 ~ 11953633 (-) True LOC110502234
TU2095938 other downstream 1956522 11800683 ~ 11803131 (-) False LOC118943913
TU2099870 other upstream 696158 14520349 ~ 14520929 (-) True G1833570
TU2101222 other upstream 1342018 15166209 ~ 15166919 (-) True G1834810
TU2101341 other upstream 1674563 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 1842012 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 1921447 15745638 ~ 15747735 (-) True G1835092

Expression Profile