Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00051837 |
| length | 803 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 10 |
| gene id | XLOC_026607 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 36589427 ~ 36602500 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006361 | transcription initiation from RNA polymerase I promoter | biological_process |
| GO:0001181 | RNA polymerase I general transcription initiation factor activity | molecular_function |
| GO:0001042 | RNA polymerase I core binding | molecular_function |
| id | description |
|---|---|
| ko03021 | Transcription machinery |
| id | description |
|---|---|
| ZDB-GENE-080225-1 | Predicted to enable RNA polymerase I core binding activity and RNA polymerase I general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase I promoter. Predicted to be active in nucleus. Is expressed in midbrain; segmental plate; and somite. Orthologous to several human genes including RRN3 (RRN3 homolog, RNA polymerase I transcription factor). |
| ensembl_id | ENSDART00000161501 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00053071 | lncRNA | downstream | 11390 | 36583100 ~ 36587136 (-) | True | XLOC_026606 |
| TCONS_00051832 | lncRNA | downstream | 141218 | 36451635 ~ 36457308 (-) | True | XLOC_026604 |
| TCONS_00051828 | lncRNA | downstream | 157839 | 36439500 ~ 36440687 (-) | True | XLOC_026603 |
| TCONS_00051826 | lncRNA | downstream | 160000 | 36428956 ~ 36438526 (-) | False | XLOC_026603 |
| TCONS_00052478 | lncRNA | upstream | 7955 | 36610334 ~ 36611024 (-) | True | XLOC_026609 |
| TCONS_00053072 | lncRNA | upstream | 351246 | 36953625 ~ 36954088 (-) | True | XLOC_026617 |
| TCONS_00053073 | lncRNA | upstream | 367024 | 36969403 ~ 36972222 (-) | True | XLOC_026619 |
| TCONS_00051861 | lncRNA | upstream | 534039 | 37136418 ~ 37143881 (-) | True | XLOC_026622 |
| TCONS_00053074 | lncRNA | upstream | 979143 | 37581522 ~ 37584807 (-) | True | XLOC_026625 |
| TCONS_00051834 | mRNA | downstream | 116540 | 36459790 ~ 36481986 (-) | False | XLOC_026605 |
| TCONS_00051833 | mRNA | downstream | 116540 | 36459790 ~ 36481986 (-) | True | XLOC_026605 |
| TCONS_00051829 | mRNA | downstream | 140361 | 36441306 ~ 36458165 (-) | False | XLOC_026604 |
| TCONS_00051838 | mRNA | upstream | 2770 | 36605149 ~ 36606884 (-) | True | XLOC_026608 |
| TCONS_00051839 | mRNA | upstream | 7706 | 36610085 ~ 36612877 (-) | False | XLOC_026609 |
| TCONS_00051840 | mRNA | upstream | 65423 | 36667802 ~ 36701870 (-) | False | XLOC_026610 |
| TCONS_00051841 | mRNA | upstream | 81454 | 36683833 ~ 36690348 (-) | False | XLOC_026610 |
| TCONS_00051842 | mRNA | upstream | 82932 | 36685311 ~ 36708503 (-) | False | XLOC_026610 |
| TCONS_00051819 | other | downstream | 351731 | 36241668 ~ 36246795 (-) | True | XLOC_026597 |
| TCONS_00051818 | other | downstream | 351804 | 36240312 ~ 36246722 (-) | False | XLOC_026597 |
| TCONS_00051816 | other | downstream | 359485 | 36234207 ~ 36239041 (-) | False | XLOC_026597 |
| TCONS_00051795 | other | downstream | 1650492 | 34947638 ~ 34948034 (-) | True | XLOC_026585 |
| TCONS_00051794 | other | downstream | 1784557 | 34805839 ~ 34813969 (-) | True | XLOC_026584 |
| TCONS_00051846 | other | upstream | 153654 | 36756033 ~ 36756149 (-) | True | XLOC_026612 |
| TCONS_00051856 | other | upstream | 365492 | 36967871 ~ 36967993 (-) | True | XLOC_026618 |
| TCONS_00051859 | other | upstream | 473319 | 37075698 ~ 37075813 (-) | True | XLOC_026621 |
| TCONS_00051873 | other | upstream | 1071269 | 37673648 ~ 37699951 (-) | False | XLOC_026627 |
| TCONS_00051881 | other | upstream | 1164906 | 37767285 ~ 37773800 (-) | False | XLOC_026629 |
