RNA id: TU2101203


Basic Information

Item Value
RNA id TU2101203
length 2049
lncRNA type sense_over
GC content 0.43
exon number 6
gene id LOC110502321
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15494874 ~ 15498318 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAATAGTGAGATTGAAGTCTTGGAGAATGACTATTTCTGAAAACGAATGTTTCTCCGTCTCATAATTTAACCCTATTAATTCAGCAGCGTCCAGGCCGCTAGAGTACTCACCCTATCGCCTGCTGTACTAACGGGAGCTGCAGCTGTTTACTGAGATCACTGATACTCCACCTGATGTGGTGGAAGTTGTCGAACCAGATCAGAATGCCTTCCAGGACCACCATCAGGCACAGACTGAGAAGGATGTGAAGATTTTTGACCAGGGTGAGACTGAACATGGACAAGGCtcaggagaaacagaaggagagccACCGGAGGAGAATCAAGGGGACCAAGTGCTTCGACAGCTGGCCGAATGACTTGGCTTTAGAAGAAGGATGAAAGGAAGGCAAGACCTGGGAAAGCTTGGTGCTCTTTCGCTCCTAGCTGGGGTCACCATCTGTTAAGGGAACgtaccttacctcccttatcaaccccactgacataAAACATCTGACAAGCTAAGAAAGAGCAAGAAAACGATCATACAGGGCACATAATGTGAGATGCACAGATCCGCTTAAAACACTAGCACTGCAAACACTCAGAACAAAGAGGGCAACAGCGTCTGGACTTTGCAGTTTCCCTCTTCGGGTCCACCTTCCAAGACTGACTACCTGTTGAAAACAAGTGACAGGCAGAACCTCCCATCCACATAGCACCCACCTCCTCTCTGTTCCACACTACAGAATTCAGTATTTTAGTCTGATTGCCATAGGACTATTGCTCGGCCTCCAACAGCAAGGCACTTCAGATGGTAGTGCGTACGGTAGTACATCACTAGGGCAAAGGTGCCTGCCGTCCAGggcctctacaccaggcggtgtcagaggaaggccctaaaaattgtcaaagaccccagccaccacagactgttctctctactaccgcatggcaagcggtaccggagtgccaagtccaggacaaaaggcttctcaacagtttttacccccaagccataagactcctgaaaaggtaaccaaatggttacccagactatttgcattgtgtgccccccccaacccctattttacgctgctgctactctctgtttatcttatatgcatagtcactttaactatacaatcatgtacatactacctaaattggcccgaccaaccagtgctcccacacattggctaaccgggctatctgcattgtgtcccaccacccacccaacccctctttttacgcttctgctactctgttcatcatatatacatagtcattttaacaatacctacatgtatatactacctcaataagcctgactaacaggtgtctgtatatagccttgctactcttttttcacatgtctttttactgttttatttctttacttacctacacacacacacacctttttttcccccacacCATTGGTTATAGGctgtaagtacgcatttcactaAGGTAAAATTGATTTGACTACTACTGAAATAATATTATTTCAGTGTAGATAAGGAAAGGCCTGTTCAAAATTAAAACATGCCAGCCAGACAAGCCAGTGtatgaatcaaatgtatttacatatgtTTGGAGTGAAAATTAGCTGACTTTGTGATCTGTAAGGTAAGTAACTGGGGAGTGGGGGCATTTCAATTATATAATTTTTTACCCTTGGTGCCTGTTTATTAATTAAAGATGGTAAATAACATTAATTGCAAAGGTTAGCCTATGCAAATGAATAGGAAAACAAAAGCTTATTAACAGGAATACATTTAGCCTAATTGGTAACAAATATGACGTGGTGGAAAGTCAGAATCCTAGTGAGGCATTTGTTTGTCAAATCTAGATTAAATAGAAGTCTTCATGTTTATCAAATCTGTATGCGATTGTGGGCTAAATCAATGACAAACAGCTGAAACGTTCAGGCTTCATGATCTGTGATCAAAACAGGTTGGCGTGTTTTCGGTTCTGTTTAGGCTAAGGTTATGCATAAGAATGCAACTGCACTGAAATGAATAGCCTGATTCAATGGAATTCTCCTGAATAATAAATATTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2101200 lncRNA downstream 251401 15237644 ~ 15243483 (-) True LOC110502317
TU2101210 lncRNA downstream 330899 15161796 ~ 15163985 (-) True G1834799
TU2100584 lncRNA downstream 334361 15160266 ~ 15160523 (-) True G1834248
TU2100576 lncRNA downstream 337049 15157624 ~ 15157835 (-) True G1834240
TU2100574 lncRNA downstream 337439 15157243 ~ 15157445 (-) True G1834238
TU2101358 lncRNA upstream 31008 15529285 ~ 15529510 (-) True G1834944
TU2101463 lncRNA upstream 195030 15693307 ~ 15696580 (-) False G1835042
TU2101466 lncRNA upstream 195030 15693307 ~ 15695427 (-) True G1835042
TU2101550 lncRNA upstream 242706 15740983 ~ 15744099 (-) False G1835093
TU2101551 lncRNA upstream 243959 15742236 ~ 15744099 (-) True G1835093
XM_021580259.2 mRNA downstream 64917 15240444 ~ 15429967 (-) False LOC110502317
XM_036960462.1 mRNA downstream 64918 15237632 ~ 15429966 (-) False LOC110502317
XM_021580257.2 mRNA downstream 64919 15237632 ~ 15429965 (-) False LOC110502317
XM_021580253.2 mRNA downstream 305301 15167238 ~ 15189583 (-) True LOC110502316
XM_021580254.2 mRNA downstream 308106 15167238 ~ 15186778 (-) False LOC110502316
XM_036960058.1 mRNA upstream 20543 15518820 ~ 15526519 (-) False pwwp2b
XM_021580264.2 mRNA upstream 20543 15518820 ~ 15526522 (-) True pwwp2b
XR_005039249.1 mRNA upstream 36553 15534830 ~ 15536064 (-) True LOC118943902
XM_036960995.1 mRNA upstream 135370 15633647 ~ 15646248 (-) True LOC110502324
XM_021580270.2 mRNA upstream 167926 15666203 ~ 15671223 (-) False tmem254
TU2101222 other downstream 327965 15166209 ~ 15166919 (-) True G1834810
TU2099870 other downstream 973955 14520349 ~ 14520929 (-) True G1833570
TU2097183 other downstream 2905184 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 3099237 12392963 ~ 12395647 (-) True LOC110502269
TU2096135 other downstream 3541251 11918171 ~ 11953633 (-) True LOC110502234
TU2101341 other upstream 477 15498754 ~ 15500261 (-) True G1834927
TU2101434 other upstream 167926 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 247361 15745638 ~ 15747735 (-) True G1835092
TU2104595 other upstream 1925198 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other upstream 1925198 17423475 ~ 17424399 (-) True LOC110502353

Expression Profile