RNA id: XR_005039249.1


Basic Information

Item Value
RNA id XR_005039249.1
length 729
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118943902
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15534830 ~ 15536064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAGAAAGAGATTACCGGTGGAAATATATTTCCAGAGCTCCCTCCGTTTGACATGCAGTACTGGAAGAggtcagagggagagaagactggctGCAATGAACAAAGTAGGAATTTCAGAAAGCAGGGGTGTATTGTGTCAAATTGGTGTTCGATGAAATCCCAGAACGGGAGGGATCAATATTATGTGCCGCAAAAAGCCAATGACAATGGCAATAAGGGAGACCAAGAGCTCCTCAAGAAATGACGTACTCATGCTAGGACCATGCAGGAGAGGAACATCTTAGAGCACAAGCAAGAAATGTGTGAGAGACATATGAGAGGGGAGGTATGCCTGTTGTGTATGTCTACTTTCACTACATTATAATTTTGTAATCCACTATTTTTTTCACATACCTGAAGTGCACTTCTCAACCAGAAGAGGGCAACATAACACCAGCCTGAGGAAAGGGTTTCACAGTCATTGGAAAGAGAAAATTAGAATTAGAAGAATGCTTTCAGTTCTGTTCTTGTTCTAAGGAAACTGTCTGAGAGAAGTGGACAGAAAGAGACTGACTTAAGTCCTTGTTTCCATTCTGGGTGAGCAGACGTTGAAAAAGATGGCTGTGCAGACACTAAGCTGAAGCTCTCCAGGTTGGAGATAGTGACATGCCTAGCTAGCGATGGAACACTGTGCCTCCAGTATGCAGTCAGTCATCCTGCAGTCAGATGTCGCCAGGGaggcacaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2101358 lncRNA downstream 5320 15529285 ~ 15529510 (-) True G1834944
TU2101202 lncRNA downstream 36553 15494884 ~ 15498277 (-) False LOC110502321
TU2101203 lncRNA downstream 36553 15494884 ~ 15498277 (-) False LOC110502321
TU2101204 lncRNA downstream 36553 15494884 ~ 15498277 (-) True LOC110502321
TU2101200 lncRNA downstream 291347 15237644 ~ 15243483 (-) True LOC110502317
TU2101463 lncRNA upstream 157243 15693307 ~ 15696580 (-) False G1835042
TU2101466 lncRNA upstream 157243 15693307 ~ 15695427 (-) True G1835042
TU2101550 lncRNA upstream 204919 15740983 ~ 15744099 (-) False G1835093
TU2101551 lncRNA upstream 206172 15742236 ~ 15744099 (-) True G1835093
TU2101553 lncRNA upstream 208163 15744227 ~ 15745282 (-) False G1835094
XM_021580264.2 mRNA downstream 8308 15518820 ~ 15526522 (-) True pwwp2b
XM_036960058.1 mRNA downstream 8311 15518820 ~ 15526519 (-) False pwwp2b
XR_002470316.2 mRNA downstream 36512 15494874 ~ 15498318 (-) False LOC110502321
XM_021580259.2 mRNA downstream 104863 15240444 ~ 15429967 (-) False LOC110502317
XM_036960462.1 mRNA downstream 104864 15237632 ~ 15429966 (-) False LOC110502317
XM_036960995.1 mRNA upstream 97583 15633647 ~ 15646248 (-) True LOC110502324
XM_021580270.2 mRNA upstream 130139 15666203 ~ 15671223 (-) False tmem254
XM_021580273.2 mRNA upstream 166178 15702242 ~ 15705419 (-) True LOC110502330
XM_021580277.2 mRNA upstream 263306 15799370 ~ 15804927 (-) False LOC110502332
XM_021580276.2 mRNA upstream 263307 15799371 ~ 15804934 (-) False LOC110502332
TU2101341 other downstream 34569 15498754 ~ 15500261 (-) True G1834927
TU2101222 other downstream 367911 15166209 ~ 15166919 (-) True G1834810
TU2099870 other downstream 1013901 14520349 ~ 14520929 (-) True G1833570
TU2097183 other downstream 2945130 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 3139183 12392963 ~ 12395647 (-) True LOC110502269
TU2101434 other upstream 130139 15666203 ~ 15671180 (-) True tmem254
TU2101534 other upstream 209574 15745638 ~ 15747735 (-) True G1835092
TU2104595 other upstream 1887411 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other upstream 1887411 17423475 ~ 17424399 (-) True LOC110502353
TU2104686 other upstream 2173708 17709772 ~ 17719204 (-) True G1837980

Expression Profile