RNA id: XM_021580270.2


Basic Information

Item Value
RNA id XM_021580270.2
length 1229
RNA type mRNA
GC content 0.40
exon number 4
gene id tmem254
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15666203 ~ 15671223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAAGAAAGATTGACATCATCCTACTCTAATCCCATTCAGAGACAGCAGTCTCGGTACAAAAGCGTACCTACTGTTTTTGTTGCACGTGTTAATTTGAGAGCGGGACAAGTTAAACGCAACCATGGCCAAAAGCGATGGGTGTCATTATTTTAGAAGAACCAGTGTTTTTTGGATAACTACAGTGGCGCTTTCGATGGGATACTTCACATGGACAGTGTTCTGGCCACAGCAGGTCCCCTATGACAACCTGGGCCCGCTTGGCACCCTGTCCAGATACCTGGTGGGCAATTACCATTCTCTCATGTACAAAGGATGGTGGGCAACCTGGGTCATCCACGTGGCAGAAGCCCTTGTTGCCATGAAGGTCTGCAGTGACAAAGGGGTGGACGGCACAATGACACGTTGCCTCTGGTTTATCCAGACGGTGCTGTTTGGCTTTGCCTCTCTCGGCCTGCTTCTCAAATACAAACCTGACCACAGGACCAAACAACACTGATGCCACAAGGAAGACCCTGCTGCAGAACAGAGTCTATAGTCTTTATAGACTACACCACCACTTCCTCTACAAATAATGAGTGGCCATGGCATGATGTGAACTTTTATCTGCAATCTGTTTGGGAACAAGATAGTCATTTGTGATTCCAGATTGTACAGTGCCCAGAGAGGACCATGAATAAAATAACTTACAACATTGTGATTGTTAAGGACCTTTAGACCTTCTGATTGAACAGTAGAAACATTCAAGCCATCAAAACTCTCCATCTTACAATACATAGCTATTGTGAAGCTTCCCACCACACACCCAACATTCCTTAGAAAAaaaattcactttttttttttatccagagcATATTTTAGGACAGAATGCAATGCACTGTCTACACAGAGATTATCACAAGGTTCAAAATGACAAAATATTTTCTGTTTTATATCATGATGGAAAAGTACCAAGTTTTCCTACAAAATGTTTTCTAATCATGCTACAGCATTTTCAAATGTTAAGTTCAGATCACCCATTATAATCACTGTTTCTTGTTTTAATGAAAAAGGACTACAGATGTTTCTTAACTTtcattagattagattagattaaTCCATTTGCCTTTAAGCATGAGCATGCTGGGAATTAATTCACAAATTAATACAGATAAGGGATAAGATGAGAGACGAAGAGTGAAGTTCTCTCATTTATAACGTGTGACAAATAAAGAGTGATTGATGAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2101358 lncRNA downstream 136693 15529285 ~ 15529510 (-) True G1834944
TU2101202 lncRNA downstream 167926 15494884 ~ 15498277 (-) False LOC110502321
TU2101203 lncRNA downstream 167926 15494884 ~ 15498277 (-) False LOC110502321
TU2101204 lncRNA downstream 167926 15494884 ~ 15498277 (-) True LOC110502321
TU2101200 lncRNA downstream 422720 15237644 ~ 15243483 (-) True LOC110502317
TU2101463 lncRNA upstream 22084 15693307 ~ 15696580 (-) False G1835042
TU2101466 lncRNA upstream 22084 15693307 ~ 15695427 (-) True G1835042
TU2101550 lncRNA upstream 69760 15740983 ~ 15744099 (-) False G1835093
TU2101551 lncRNA upstream 71013 15742236 ~ 15744099 (-) True G1835093
TU2101553 lncRNA upstream 73004 15744227 ~ 15745282 (-) False G1835094
XM_036960995.1 mRNA downstream 19955 15633647 ~ 15646248 (-) True LOC110502324
XR_005039249.1 mRNA downstream 130139 15534830 ~ 15536064 (-) True LOC118943902
XM_021580264.2 mRNA downstream 139681 15518820 ~ 15526522 (-) True pwwp2b
XM_036960058.1 mRNA downstream 139684 15518820 ~ 15526519 (-) False pwwp2b
XR_002470316.2 mRNA downstream 167885 15494874 ~ 15498318 (-) False LOC110502321
XM_021580273.2 mRNA upstream 31019 15702242 ~ 15705419 (-) True LOC110502330
XM_021580277.2 mRNA upstream 128147 15799370 ~ 15804927 (-) False LOC110502332
XM_021580276.2 mRNA upstream 128148 15799371 ~ 15804934 (-) False LOC110502332
XM_021580275.2 mRNA upstream 128148 15799371 ~ 15804977 (-) True LOC110502332
XM_021580278.2 mRNA upstream 193848 15865071 ~ 15869051 (-) True LOC110502333
TU2101341 other downstream 165942 15498754 ~ 15500261 (-) True G1834927
TU2101222 other downstream 499284 15166209 ~ 15166919 (-) True G1834810
TU2099870 other downstream 1145274 14520349 ~ 14520929 (-) True G1833570
TU2097183 other downstream 3076503 12580816 ~ 12589700 (-) True LOC110502275
TU2096928 other downstream 3270556 12392963 ~ 12395647 (-) True LOC110502269
TU2101534 other upstream 74415 15745638 ~ 15747735 (-) True G1835092
TU2104595 other upstream 1752252 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other upstream 1752252 17423475 ~ 17424399 (-) True LOC110502353
TU2104686 other upstream 2038549 17709772 ~ 17719204 (-) True G1837980
TU2104675 other upstream 2054040 17725263 ~ 17730512 (-) False LOC110502361

Expression Profile