RNA id: TCONS_00051840


Basic Information

Item Value
RNA id TCONS_00051840
length 261
RNA type mRNA
GC content 0.47
exon number 10
gene id XLOC_026610
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36667802 ~ 36711708 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTGGCTGGAGCAAAAGACAAAATGCGAGGCTCGActtgaggaagaggaggagcgcAGTCAGGCTTTTCAGCAAGAaGTCCGTGAGCTTGAGGCTGAGCTAGAAGATGAGCAGAAGCAATGTACCTCTAGAGAGAGACAAATAATCACTTTTGAAAATCGTGTTTGGAGACAACTCTCCAACTATATTGAGaaattctGCACCCAAACAAGTCCAGTCACCAGAAACATCAGCCCCACCGAAAGGAAGATTGGTCCTACT

Function

GO:

id name namespace
GO:2000574 regulation of microtubule motor activity biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101124-2 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Predicted to be part of myosin complex. Human ortholog(s) of this gene implicated in patent ductus arteriosus and thoracic aortic aneurysm. Orthologous to human MYH11 (myosin heavy chain 11).

Ensembl:

ensembl_id ENSDART00000183457

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052478 lncRNA downstream 56778 36610334 ~ 36611024 (-) True XLOC_026609
TCONS_00053071 lncRNA downstream 80666 36583100 ~ 36587136 (-) True XLOC_026606
TCONS_00051832 lncRNA downstream 210494 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00051828 lncRNA downstream 227115 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051826 lncRNA downstream 229276 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00053072 lncRNA upstream 251755 36953625 ~ 36954088 (-) True XLOC_026617
TCONS_00053073 lncRNA upstream 267533 36969403 ~ 36972222 (-) True XLOC_026619
TCONS_00051861 lncRNA upstream 434548 37136418 ~ 37143881 (-) True XLOC_026622
TCONS_00053074 lncRNA upstream 879652 37581522 ~ 37584807 (-) True XLOC_026625
TCONS_00053075 lncRNA upstream 932230 37634100 ~ 37649261 (-) False XLOC_026626
TCONS_00051839 mRNA downstream 54925 36610085 ~ 36612877 (-) False XLOC_026609
TCONS_00051838 mRNA downstream 60918 36605149 ~ 36606884 (-) True XLOC_026608
TCONS_00051836 mRNA downstream 65302 36589477 ~ 36602500 (-) False XLOC_026607
TCONS_00051837 mRNA downstream 65423 36598526 ~ 36602379 (-) True XLOC_026607
TCONS_00051835 mRNA downstream 65733 36589427 ~ 36602069 (-) False XLOC_026607
TCONS_00051843 mRNA upstream 1626 36703496 ~ 36711708 (-) True XLOC_026610
TCONS_00051844 mRNA upstream 42648 36744518 ~ 36750068 (-) False XLOC_026611
TCONS_00051845 mRNA upstream 43208 36745078 ~ 36745935 (-) True XLOC_026611
TCONS_00051847 mRNA upstream 54443 36756313 ~ 36764865 (-) True XLOC_026613
TCONS_00051848 mRNA upstream 105772 36807642 ~ 36824190 (-) False XLOC_026614
TCONS_00051819 other downstream 421007 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 421080 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051816 other downstream 428761 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051795 other downstream 1719768 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051794 other downstream 1853833 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051846 other upstream 54163 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 266001 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051859 other upstream 373828 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051873 other upstream 971778 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 1065415 37767285 ~ 37773800 (-) False XLOC_026629