RNA id: XM_021580278.2


Basic Information

Item Value
RNA id XM_021580278.2
length 1154
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110502333
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15865071 ~ 15869051 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTTAAAGTACAACGGTTAAAGGCGCGTCAAACTCTCTGCTAGTGCATTCCGTGAGGTTGTAACTTTAAGCTGCGTCTATATCTCCTTGCTAAGCGTCGTAAAAAACCTGCTGCTACTATATCGCAATGGCTGATCAGCTGACAGAGGAGCAGATTGCCGAGTTCAAAGAGGCTTTCTCGCTCTTTGACAAGGATGGCGATGGCACCATCACCACCAAAGAGCTGGGCACTGTCATGCGCTCTCTGGGCCAAAACCCCACAGAGGCTGAGCTGCAGGACATGATCAACGAGGTGGATGCTGATGGTAATGGAACGATAGACTTCCCAGAGTTCCTGACCATGATGGCGAGGAAGATGAAGGACACAGACAGTGAGGAGGAGATCAGAGAAGCATTCCGCGTCTTCGACAAGGATGGGAACGGTTACATCAGTGCTGCTGAGCTGCGCCACGTGATGACAAACCTTGGGGAGAAGCTGACTGATGAAGAAGTTGATGAGATGATTAGAGAAGCAGACATTGATGGTGATGGCCAGGTCAACTATGAAGAGTTCGTACAAATGATGACAGCGAAGTGAAGGCCTTGTACAGATATTTCTTATATAAATAACTTGCCTTTTTTTCTTTGTAATTTATCTGTAAAATCTTAATAGCCCTCCCTGCTGTCCAAAGGAACTGCATGTAAACTGCATAGGCTCTGAGTCCCCATGTCCCTTTCTTTTGCTGTCATCGTGTTTTGGAGTGACGGCACGGTTTTAATAAGGAATGCCCGTCGCAGCCCCAGGGATTGGCCAGAGCTTAGAACCGTCACATCTGCTCAGCTCCAGATGCGTGGTGACGGTGGAGACCTGTCAGCTGGTTGTCACTTGGCAACACTGTTGGAATGGAAACAGTGTAGAGGAGTCAACACTGCATGGACTACGGACAAAGTATATGAAATCTCTCAGCATTGCACTACTGCAAAAAATGACTGGTGTATCTTCTAGATACTCGTACAAACTCTTTTTGTATCTGCTGTTCTATACCAGAAAACAACTTTGTTTTAATCTTACTATGCTTTTTAATGTTTTACTCACTATTCTTTTATGGCCTTTGGCCGTGCTTCAACTAATTCATTCCAAgttgtatatttttgttttccAATAAAATTTACAA

Function

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2101656 lncRNA downstream 514 15864245 ~ 15864557 (-) True G1835179
TU2101583 lncRNA downstream 67243 15796709 ~ 15797828 (-) False G1835121
TU2101582 lncRNA downstream 67243 15796802 ~ 15797828 (-) False G1835121
TU2101584 lncRNA downstream 67243 15796969 ~ 15797828 (-) True G1835121
TU2101585 lncRNA downstream 72813 15791949 ~ 15792258 (-) True G1835122
TU2101660 lncRNA upstream 2168 15871219 ~ 15871433 (-) True G1835183
TU2101641 lncRNA upstream 43679 15912730 ~ 15915938 (-) True G1835167
TU2101692 lncRNA upstream 51422 15920473 ~ 15927155 (-) True G1835214
TU2101920 lncRNA upstream 217814 16086865 ~ 16087584 (-) True G1835434
TU2101937 lncRNA upstream 250506 16119557 ~ 16119799 (-) True G1835450
XM_021580275.2 mRNA downstream 60094 15799371 ~ 15804977 (-) True LOC110502332
XM_021580276.2 mRNA downstream 60137 15799371 ~ 15804934 (-) False LOC110502332
XM_021580277.2 mRNA downstream 60144 15799370 ~ 15804927 (-) False LOC110502332
XM_021580273.2 mRNA downstream 159652 15702242 ~ 15705419 (-) True LOC110502330
XM_021580270.2 mRNA downstream 193848 15666203 ~ 15671223 (-) False tmem254
trnai-uau-47 mRNA upstream 506829 16375880 ~ 16375973 (-) True trnai-uau-47
XR_005039292.1 mRNA upstream 777329 16646380 ~ 16646432 (-) True LOC118943947
XM_021580293.2 mRNA upstream 804358 16673409 ~ 16730038 (-) False LOC110502345
XM_021580294.2 mRNA upstream 804358 16673409 ~ 16730038 (-) False LOC110502345
XM_036960893.1 mRNA upstream 804358 16673409 ~ 16730039 (-) False LOC110502345
TU2101534 other downstream 117336 15745638 ~ 15747735 (-) True G1835092
TU2101434 other downstream 193891 15666203 ~ 15671180 (-) True tmem254
TU2101341 other downstream 364810 15498754 ~ 15500261 (-) True G1834927
TU2101222 other downstream 698152 15166209 ~ 15166919 (-) True G1834810
TU2099870 other downstream 1344142 14520349 ~ 14520929 (-) True G1833570
TU2104595 other upstream 1554424 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other upstream 1554424 17423475 ~ 17424399 (-) True LOC110502353
TU2104686 other upstream 1840721 17709772 ~ 17719204 (-) True G1837980
TU2104675 other upstream 1856212 17725263 ~ 17730512 (-) False LOC110502361
TU2105357 other upstream 2980646 18849697 ~ 18854172 (-) True LOC110502394

Expression Profile