RNA id: TCONS_00051847


Basic Information

Item Value
RNA id TCONS_00051847
length 483
RNA type mRNA
GC content 0.50
exon number 4
gene id XLOC_026613
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36756313 ~ 36764865 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACACACTCTGCAGTCTCAGTGGCCTGGACCCTCTCTGGgaTTGGAACGTCACGTGGTACACAGCACATCCAGACCTTACAAAGTGCTTCCAGCACACAATACTGGTGTGGTTCCCTTGTTTCTATCTCTGGATCTGTGCCCCTTTCTACTGCTTGTATCTCAAATTCTATGACAATGGACGCATATCTATATCCAGCCTCTGCTGTGCCAAGACGGGTTTGGCTCTCTGTCTGGCCTCCTTTGGTTTTCTGGAGACGGTCTACCTGCTGGTGGAAAGAAGGAGAGACATAGAGCATCACATGGTCTTTCTCCTGAGCCCTATAATCCGCAGCCTTACCATGATACTGGCGATGTTAATGATCCACTTAGAAAGGCTGAGGGGCTTTCGTTCCTCTATGTTTCTCTTTCTGTTTTGGATGCTGGCGGTGGTCTGCTCACTGGTGCCTCTCAGAGCCAACATACAAGCCATCATAGAGGAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050517-19 Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in EVL; dermal bone; inner ear; opercular flap; and pronephric proximal straight tubule. Human ortholog(s) of this gene implicated in arterial calcification of infancy; coronary artery disease; and pseudoxanthoma elasticum. Orthologous to human ABCC6 (ATP binding cassette subfamily C member 6).

Ensembl:

ensembl_id ENSDART00000173186

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052478 lncRNA downstream 145289 36610334 ~ 36611024 (-) True XLOC_026609
TCONS_00053071 lncRNA downstream 169177 36583100 ~ 36587136 (-) True XLOC_026606
TCONS_00051832 lncRNA downstream 299005 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00051828 lncRNA downstream 315626 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051827 lncRNA downstream 317962 36430945 ~ 36438351 (-) False XLOC_026603
TCONS_00053072 lncRNA upstream 188760 36953625 ~ 36954088 (-) True XLOC_026617
TCONS_00053073 lncRNA upstream 204538 36969403 ~ 36972222 (-) True XLOC_026619
TCONS_00051861 lncRNA upstream 371553 37136418 ~ 37143881 (-) True XLOC_026622
TCONS_00053074 lncRNA upstream 816657 37581522 ~ 37584807 (-) True XLOC_026625
TCONS_00053075 lncRNA upstream 869235 37634100 ~ 37649261 (-) False XLOC_026626
TCONS_00051844 mRNA downstream 6245 36744518 ~ 36750068 (-) False XLOC_026611
TCONS_00051845 mRNA downstream 10378 36745078 ~ 36745935 (-) True XLOC_026611
TCONS_00051843 mRNA downstream 44605 36703496 ~ 36711708 (-) True XLOC_026610
TCONS_00051842 mRNA downstream 47810 36685311 ~ 36708503 (-) False XLOC_026610
TCONS_00051840 mRNA downstream 54443 36667802 ~ 36701870 (-) False XLOC_026610
TCONS_00051848 mRNA upstream 42777 36807642 ~ 36824190 (-) False XLOC_026614
TCONS_00051849 mRNA upstream 43025 36807890 ~ 36823643 (-) False XLOC_026614
TCONS_00051850 mRNA upstream 43025 36807890 ~ 36823674 (-) True XLOC_026614
TCONS_00051851 mRNA upstream 71846 36836711 ~ 36846496 (-) False XLOC_026615
TCONS_00051852 mRNA upstream 71854 36836719 ~ 36839115 (-) True XLOC_026615
TCONS_00051846 other downstream 164 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051819 other downstream 509518 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 509591 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051816 other downstream 517272 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051795 other downstream 1808279 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051856 other upstream 203006 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051859 other upstream 310833 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051873 other upstream 908783 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 1002420 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051892 other upstream 2148513 38913378 ~ 38918717 (-) False XLOC_026635

Expression Profile

//