RNA id: TCONS_00051850


Basic Information

Item Value
RNA id TCONS_00051850
length 4326
RNA type mRNA
GC content 0.45
exon number 29
gene id XLOC_026614
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36807642 ~ 36824190 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTACATGTTAAGGAGTTTCAGAGGTCTAATGGTTTAATGTTTCAGGATTGGAACGTCACGTGGTACACAGAACATCCAGACCTCACAAAGTGCTTCCAGCACACGATACTGGTGTGGTTCCCTTGTTTCTATCTCTGGATCTGTGCCCCTTTCTACTGCTTGTATCTCAAATTCTATTACAATGGACGCATATCTATATCCAGCCTCTGCTGTGCCAAGATGGGTTTGGCTCTCTGTCTGGCCTCCATTGGTTTTTTGGAGACGGTCTACCTGCTGGTGGAAAGAAGCAGAGACATAGAGCATCTCATGGTCTTTCTCCTGAGCCCTATTATCCGTAGCCTTACCATGATACTGGTGATGTTGATGATCCACTTAGAAAGGCTGAGGGGCTTTCGTTCCTCTGTGTTTCTCTTTCTGTTTTGGATGCTTTCGGTGGTCTGCTCACTGGTGCCTCTCAGAGCCAACATACAAGCCAACATAAAGGAGggttTCTCTGCAGATCCGATGAGATTTGCGGCATTTTTCACATTCTTCTCTCTTCAGCTGGCACAGCTCATCCTCAGCTGTTTCGCTGACCAGCGGCCAGACACTCTTAAACCTGTATATGTGAAGAACCCATGTCCAGTTGAGGATGCCTCTTTCCTGTCAAAATTACTTTTCTGGTGGTACGGCAGACTGGTGGTGAAGGGCTACCAATGTTTAATTAAGATTATAACTATTCCAAGCTCTCTGAATGAAGCGCAAACACTTGGTTTTAAGCTGAGTTCCTGTGTTAAGCAGCTGTTCAGAAAACTCTTTAAGGAACAGTGTACAGGTTTTGTTCTGTTTAGGACACTGGCCAAAATATTCAGCCCCTACTTTCTGACTGGGACTCTCTTTCTTGTCATCCAAGATGCTTTGATGTTCTCCATCCCACAAGTACTAAGTTTACTGCTTGGCTATGTGAGGGATGAAGATGCCCCCTTGTGGAAGGGTTACCTCTTCGCCTTTTCTCTGTTCCTGTTGTCTTGTCTGCAGTCCCTATTTAACCATCAGTACATGTATACCTGCTTAACAGTTGGCATGAGGGTTAAAACTGCAGTTATGGGCCTGGTGTACCGGAAGTCTCTGGTCATCAACAGTGCAGCCCGCAAGACATGTACAGTCGGAGAGATAGTGAACTTGGTTTCAGCTGACACCCAAAAACTTGTGGATTTCGTAATGTACTTTAATGCATTGTGGCTGGCACCCATTGAAATCGCCTTGTGTCTTTTCTTCCTCTGGCAGCATCTCGGTCCATCCACCTTGGCTGGCATCACCACTGTGATACTCATCTTTCCTTTAAATGGGTTTATTGCCAAAATGAGAAGCAAGCTCCAGGAGGTCCAGATGAAACATAAGGATGAACGCATAAAGTTGATGAACGAAATCTTGAGTGGCATAAAGATCCTTAAGTTTTATGCCTGGGAAAAGGCCTTCAGAGAGCGAGTGCTGGGATACAGGGAAAAAGAGCTGAATGCTCTGAAGAAGTCCCAGATACTTTACTCCGTTTCCATCGCCTCCTTTAACTCATCAACATTATTGATTGCGTTTGCCATGTTCGGGGTGTATGTGCTAATTGATGATAAGCATGTTCTGGATGCTCAGAAAATCTTTGTGTCCATGGCTCTTATCAACATACTTAAAGCTCCACTCAGTCAACTGCCAATTGCAATGAGCACTACTATGCAGGTGGTGGTTTCTCTCAAACGTCTTGGGACGTTTCTCGATCAAGATGAGCTGAAACTTGATAGCAAAAAACTCATTGGCTctctatttatttctctttcagaTATTGAAAGTGTTGTTATTAACAATGGCACATTCAGCTGGTCTAAAGACAGCACACCATGTCTCAGGAGAATCAATGTCAAAGTTCAGCGAGGTTCACTGGTGGCTGTAGTTGGTCATGTGGGCAGTGGAAAATCCTCTCTCTTGTCTGCAATGCTTGGAGAAATGGAAAAGAAAAGTGGCCACATCACAATCACGGGCTCTGTGGGTTATGTTCCTCAGCAAGCATGGATCCAGAATGCCACTCTTAAAGACAACATTTTGTTTGGATGTGAGAAGAAAGACAGTTTGTACCAGAAAGTACTGGAAGCCTGTGCCCTCCTACCAGACTTAGAGATCCTTCCTGCACGAGATGCAACAGAGATTGGAGAGAAGGGGTTAAATCTGTCAGGAGGTCAAAAACAGAGAGTAAGTCTGGCACGAGCAGTATACAGGAATTCTGATATCTATCTGTTGGATGATCCCTTGTCAGCGGTGGATGCACATGTGGGTCAACACATCTTTGAAAAAGTCATTGGACCTAATGGATCTCTTAAAAATAagACTCGTGTTCTGGTGACTCATGGGCTCAGCTTTCTGCCCCAAGCAGACCTGATCCTGGTGATGGCAGATGGAGAAATCAAAGAGATGGGCTCTTATGCCGAGCTTCTGAGCAGAAAGAATGCCTTTGCAGAGCTTAAGGCTTTTTCTGTTAGTGAACGCAAGGAAAGTGCCACCCTAAAAGGTAAGATAGAGTTTCCAGCTactatggtaacactttatttgttaacattgttaaaaaatgCAGATGTGAAACTGGAGATGTATGTGGAGTACTTCAGGACCATCGGCTTGGCCTTCATAATCCCCATCATCTTCCTCTATGCGTTCCAGCAAGTTGCTTCACTGGCTTACAACTACTGGCTCAGTTTGTGGGCAGATGACCCGGTTATAAATGGAACACAGGTTAACACTGATCTGAAGCTTGGTGTATATGGAGCTCTTGGCTTTGCTCAAGGAATTGCAATTTTCGGGACTACTGTAGCAATATCCCTTGGAGGAATAATTGCATCCCGGCAACTTCATCTGGACCTTCTGAACAACGTACTTCACTCTCCCATGTCATTCTTTGAAAGTACACCTAGTGGTAACCTTCTCAATCGTTTCTCAAAAGAGATAGACGCCATTGATTGCATGATCCCTCATGGTCTGAAGATCATGCTAGGCTATGTGTTCAAACTTCTGGAGGTTTGCATTATCGTGCTGATGGCAACTCCATTTGCAGGAGTGATCATATTGCCGTTGACTCTTCTCTATGCCTTTATCCAGAGTTTCTATGTTGCCACATCCTGCCAGTTGCGAAGACTAGAGTCAGTGAGTCGTTCACCCATTTATACTCATTTCAATGAGACAGTCCAAGGAGCCAGTGTGATCCGGGCCTTTGGTGAACAGCCTAGATTCATTCTTCAGGCTAACTGTCGAGTGGACCTCAATCAAACGTCCTACTTCCCAAGATTTGTAGCTTCAAGgTGGCTGGCAGTAAATCTAGAGTTCCTGGGTAACTTGCTGGTCCTTGCTGCAGCTATCCTATCTGTTATGGGAAGGGCAACTTTAAGTCCTGGAACAGTGGGGCTAGCTGTGTCTCACTCTCTCCAGGTCACCGGGATTCTAAGCTGGATTGTGCGGTCATGGACTGATGTAGAAAACAACATTGTGTCTGTTGAGCGAGTGAAAGAATATGCTGAAACGGCAAAAGAGGCACCATGGACATTCGAGGACAGTCCACTCCCGTCTGACTGGCCCAGATCCGGATCTATTGGATTCCAGGCATATGGACTTCAGTATCGCAAGGGTCTTGACTGGGCCTTGAAAGAAATTTCCCTCAGTGTCAATGAGagagaaaaaGTTGGAATTGTGGGAAGAACAGGAGCTGGAAAATCATCTCTGGCTCTTGGAATCTTTCGTATCCTTGAGGCAGCAAAAGGAAAGATCTTTATAGATGGCATAAACATAGCAGAGATTGGACTGCATGAACTGAGGTCTCGTATCACTATCATCCCACAGGATCCAGTGCTGTTCTCGGGTTCGTTACGTATAAATCTGGATCCCTTTGATCGCTACACTGATGAAGAGGTTTGGAGATCTCTAGAACTTGCACATCTCAAGACCTTTGTGTCTGACTTGCCTGACAAACTCAACCATGAGTGTTCAGAGGGTGGAGAGAATCTCAGTTTGGGTCAGCGGCAGCTGATTTGCCTGGCTCGAGCTCTCCTCAGAAAGACGAAGATTCTGGTTTTGGATGAAGCCACTGCAGCGGTGGATCTAAAGACGGACAATCTGATACAGTCCACCATCCGAACCCAGTTTGAGGACTGTACAGTTCTGACCATTGCACACCGCCTCAACACCATCATGGACTACACAAGGGTAATTGTGATGGACAGAGGGAACATCACAGAGATAGACTCTCCATCTAACCTGATATCTCAGCATGGTCAATTCTATCGAATGTGTCGAGAGGCTGGGCTGGTGTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110208-2 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in arterial calcification of infancy; coronary artery disease; and pseudoxanthoma elasticum. Orthologous to human ABCC6 (ATP binding cassette subfamily C member 6).

Ensembl:

ensembl_id ENSDART00000185075

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052478 lncRNA downstream 196866 36610334 ~ 36611024 (-) True XLOC_026609
TCONS_00053071 lncRNA downstream 220754 36583100 ~ 36587136 (-) True XLOC_026606
TCONS_00051832 lncRNA downstream 350582 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00051828 lncRNA downstream 367203 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051827 lncRNA downstream 369539 36430945 ~ 36438351 (-) False XLOC_026603
TCONS_00053072 lncRNA upstream 129951 36953625 ~ 36954088 (-) True XLOC_026617
TCONS_00053073 lncRNA upstream 145729 36969403 ~ 36972222 (-) True XLOC_026619
TCONS_00051861 lncRNA upstream 312744 37136418 ~ 37143881 (-) True XLOC_026622
TCONS_00053074 lncRNA upstream 757848 37581522 ~ 37584807 (-) True XLOC_026625
TCONS_00053075 lncRNA upstream 810426 37634100 ~ 37649261 (-) False XLOC_026626
TCONS_00051847 mRNA downstream 43025 36756313 ~ 36764865 (-) True XLOC_026613
TCONS_00051844 mRNA downstream 57822 36744518 ~ 36750068 (-) False XLOC_026611
TCONS_00051845 mRNA downstream 61955 36745078 ~ 36745935 (-) True XLOC_026611
TCONS_00051843 mRNA downstream 96182 36703496 ~ 36711708 (-) True XLOC_026610
TCONS_00051842 mRNA downstream 99387 36685311 ~ 36708503 (-) False XLOC_026610
TCONS_00051851 mRNA upstream 13037 36836711 ~ 36846496 (-) False XLOC_026615
TCONS_00051852 mRNA upstream 13045 36836719 ~ 36839115 (-) True XLOC_026615
TCONS_00051853 mRNA upstream 80365 36904039 ~ 36932515 (-) False XLOC_026616
TCONS_00051854 mRNA upstream 80367 36904041 ~ 36944749 (-) False XLOC_026616
TCONS_00051855 mRNA upstream 96798 36920472 ~ 36932515 (-) True XLOC_026616
TCONS_00051846 other downstream 51741 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051819 other downstream 561095 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 561168 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051816 other downstream 568849 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051795 other downstream 1859856 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051856 other upstream 144197 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051859 other upstream 252024 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051873 other upstream 849974 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 943611 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051892 other upstream 2089704 38913378 ~ 38918717 (-) False XLOC_026635

Expression Profile

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