RNA id: XM_021580354.2


Basic Information

Item Value
RNA id XM_021580354.2
length 6390
RNA type mRNA
GC content 0.46
exon number 24
gene id LOC110502378
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18242698 ~ 18255850 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAgaagcaaacatttctaaaaaaaacaacagattttgctttgtcattataggataTTGTGTGCAGATAGATGAGGCGGAAAAACTAGTTAATTTTAGAATacagctgtaacctaacaaaatgtggaaaaagtcaagaggtctgaatatttggtggacagtttttttttttttcaatctctTTCTCATCTGCAGTTTGTGACGGTCTCACCGTCAGTATTATTTCTTTCTCACAGCAACAGATTAGTGCAGGTATTGGTTGAGAGGCTCTACTCCTTACTTGTCATTCTCAGACACACCTTCCTCCTTACCATCTGAAGAGAGCAGTGTCCCCACTGCCCGGGTCTTCTTACTGCTGGATTTGTAAGTCATCTCTACTCACTTGATTCAACTCCAAATGTCATATCATTTtaccagacactcttatccagagcaaattacagtagtgagtgcatacattttcatactgatCCCTACACGGAATTCTACATGGGAAtgaaacccacaaccctggcgttgcaaacgCCGTGCTCTACCGACTGATCTACAAGGGCTGTGTTTTGAACTACCCTACCAGACTACACAGAATTCTACATGGGAAtgaaacccacaaccctggcgttgcaaacgCCGTGCTCTACCGACTGATCTACAAGGGCTGTGTTTTGAACTACCCTACCAGACTCCTCGAGATTTGATATTTGGTTCTGATCGAGAACACATGAAGCAGTGCAGAGTCATCCTAGTCACAGATCTTTGGGGTATGTTCAGGCACAATCCCAGAAAGTACTAGTCTGATATGTAAATTGACTTTATTTTTGTATGAATTGGTTGGAATATTAATAACTTTGCCTCATGTGAAATACAAAGTTATTTTCAGTGTACAAGTTTTGCAGTATAGTGCCGTAGCATATTTTGTTTGGTCATATCAACATTTACTACAGAAACATACAAACCTCAATGCGTTCTTCCTTGCACCTCTTGATTGCAAGCCACGTCATTTTATAGCTTTTTAAATGAAGGTGGGAATTTGTAGGCAAGCCACTTCATGTATATAATCACTTAGTTGCTAATACTATGTATTGGTTATTGAGAGGCTTTGACAACCACCgttcggccatattggcactacccagtaggagcagtcctctaTAGGAATGAATGGggttctacagtatttcaatgaaATGTTTCATAGACAAAATTACATGGATTTAAGTGTTTTGTTGTAATGGAGAAAGTAACCGTAGTAATCTAAAAAATTATACTttaaggataaaaaaataaataatgtttaGCTCACAAtgtaatttaaaagtatgcattaagatgtttgtaatataataaatgtggcaaaaacgAATGTAGACATCAATAAAAGcgtttctatagcttccaaaatatgttttacaatGGTGGGGCTGCCAAGATGTAGTCAGTGGCTTCAACACAGTGCCCCCTATTAGTCATCcagtgtatatataaatgattttgtcacttcccacaaccAATCGGTAGCTCGAGTTTGACACGTGTGTCTGCGGAATTCCCCCAACACTCCGGGGCTTTCCAGCTGACTGATAGACTGTATGCGATCAGGCGATCATAACAGTCTAACTAACCAGATAGATTGGATACAATCAACGGTTGACTCGATGGAGAAATACATGGAACAGAAATGCATGGAGCAAATCCCGGATTTCAGCTGACACTGAAGTGAACACCACTGTGTGCTTTTGAGGGTACGCCGTGACATTCTACAATCGGGTTGATCGACTACAACAGCAGCTGTTGTGCTGTCTTGTTcattgcgtagaggtggatcaagttCAAGGAGTTCAAAGGGAGGTGACAGTGAGCCTGAAATATCATCATCTATGATCCACTGACAGGCATCATGTCTGGAGCACTGAGAATGGATGAAGCTCAGTACAGCATGAAAATGATTGAAAATGAGCTGATGATGAATTTGTCCTATGAGTTCATGCCCCCTGTGGATGTCAAGATCGAGCCCTATGTACCGGAGACCGCTCATGGACCCTACATTCAGATCATTGAGGAGCCCAAACAGAGAGGCTTCAGATTCCGCTATGAGTGTGAGGGTCCGTCCCACGGTGGGCTCCCAGGGGCCTCAAGCGAGAGGAACAGGAGGACCTATCCAACTGTCAAGGTGTCTAACTATGTGGGGATTGCCAGGGTGGAGGTGCAGCTAGTGacccactcagaccccccccagGTCCACGCTCACAGTCTGGTGGGGAGGCAGTGCTGCACGGAGAGTGGCATATGCAGTATGGATGTGGGCCCAAACGACCTCACAGCACAgttcaGTAACCTGGGCATCCTTCATGTCActaagagaggggtgggggaagtGTTGTGCAAGAGACtgagagatgagaagaggaggcAAGGGGGGCAGCACTATCATTTTACTGATGCAGAGGAACAAGCCATAGGGAGAGAAGCCAAGGAGCTTGGGAAGATCATGGACCTGAACATAGTGAGGTTAAAGTTCACGGCCTACCTCCAGGACAGTAACGGCGGGTTCTCTAGGGCCCTGAAGCCGGTGGTCTCCAACCCTATCTATGACAGCAAGTCACCCAATGCCTCGAACCTGAAGATCTCCCGTATGGATAAGACCAGTGGGTCTGTGCTGGGAGGAGATGAGATCTTCCTACTGTGTGACAAAGTACAGAAAGATGACATTGAGATCCGCTTTTATGAAGAGGATGATGGAAGCTGGGAGGCCTTTGGTGATTTCTCTCCAACTGATGTCCACAAGCAGTACGCCATTGTGTTTAAGACGCCACCGTACCACAGCGCCGAGATCGAGCGTCAAGTCACTGTATTCCTCCAGTTGAAAAGGAAGAAAGGCGGCGACTGCAGCGACCCCAAGCAGTTTACCTACGTTCCCCGAGTTCAAGATAAAGAGGAGGTGCAGCGTAAAAAGCAGAAGCCCTTCCCCTATAATGACCAATGGGGAGGACCTCTGGGAGGGGCTGGGGGTGCAGGGAGAGGGGCCGGAGGATTCGGAGGCGGAGCAGGTGGCGGTGGCGGTGAGGAACCTAGATGCTTCCAGTTTAACCAGCAGATGAATGGAACGGGGTGGATGGGGGGTGGATTCTCTGGTTTTGGGGGCGGTGGAGCCCAGATGTCAGGCACCACTGCCCAGGCTGAGGGGACCCAGCAGCAACAGGCAGGAGGGATGGCCGGACAGACGCCAGGACAGACATCCTCACCACTACAACAGCAGCTCTTCCAGATTGCTGCCACTCTCCAGAGCAGGGCCACTCGGATGAGCAAGCAGACAGCTGGGGCTCTACTACAGTACTGCACCACTGGGGACGTCCGGGTCCTTCTGGCAATGCAGAGACACCTATGTGGGGTCCAGGATAAAAACGGAGACACGCCTTTGCACCTGGCCATCATTCACCAGCAGTCAGCTGTGACCCAGCAGCTGGTTCATACACTCCTCACCATCCAGCAACACAAAGTCCTTAACAAGCTCAACCACCTCGGCCAGactCCTCTCCATCTGGCGGTGATCACCAGGCAGGTTAAGGTGGTGGATGTTCTCCTCCGGGCCGGAGCAGACCCCACCCTGCTGGACCGGGACGGACGGACCGCCCTGCACCTGGCAGCGCTGGCCGGGGATGACGTCACACTCCGGGTCCTGCTGGGCCACCTAGGAGAACGCTACCTCCACCTGGTCAACATGGCCGACTATCATGgtctccatcctctccacctgGCTGTTTGTAAGGGAGGAGAGCGCTGTCTGCGTCTGCTGGTGGAGGGCGGGGCTAAGATCAACGCCCCGGAGCAGAAGAGTGGATGCTCCGCCCTCCACCTGGCTGTTAGAGAGAACTACTTCAAAGTGGCCTGCACTCTCATCACAGAGCTGAAAGCAGATGTAAACATGTGTACGTTTGGAGGGAACACTCCTCTCCATCTGGCTGCCAGTCGCAGCTCCCCCCCCCTCTGCTCCATGCTCATTGCTGCAGGAGCCGACAAGAATCTGGAGAACGACGAGCCGCTCTTCTTCAGCTCCTCCTCGTCAGATGAGGAGCAGGAGGATGGACCAGTAAGAGATTTCAGAGAATCGGCGATCCAACAGCTACCGAACACAACACCACTTTCAGAGGGAGAACAAGTCAACCCTCGTAAGAGGTCAGCAACAGGACATACACCCTTTGACCTGGCTAAATGTCATAAGGTGAGAAACCTTCTAGACACCAGACAGAGTCCCAAGCCCAGTCAACAATCAAGTAAAAAGCCTAAACCGAGCAGCATGGAAGCAGAAAGAGGGCAGCTAGACAGTGAGACGCTAAGCAAGCTGTGTGAGCTCCTCAGTCTGAACGATGTGCCCTGGAGACAGCTGGCAGAGAAACTCAACATGCTCTCACTGGCACACCTATATCAGGAGAGTCCCTTGCCCTGTCACAACTTGCTGGAGAATTACCAGttgggtGGCGGTCCAGTGGAAGGCCTGGTGGAAGCTCTACAGTCTCTGGGTCTGACTGAAGGAGTGAGACTACTGAGACAGGCTGAGCTGAGAGAGGACAAACAAAACACAGatcagacagtggacagtggctTTGCTAGTCAGCCAatggaggaggagctggaggagccaGCCTTGGCCAACCAGTGAGCAGCAGGAAGGGTGAGGGGTAAGACCCTCGTGTGAGGGACGTTTCACCCCAACGTTTCATCATGGAGATATGACTAACTCTGTTCAGCACGCACATTGGGAATCTGATGTCATACCCAAGCCTCTACTGATAAATGCAGAATTCTCTCTCTGCCATGACTGGCAGTCAACCAGTTTGAATTTTTCTAACGAGCTGAAGGGAAGAAAATCTCAATGTACAATTTTAAGTGGCGTTATATCTTGTTCCGTTATTTCTGATGGTGACTGAGTTTTTTTTTTGATGGTCCATTTGTGTCTTCCAAAAAGTCCCAGTATAAATGAAAATTCTTAAACGtgcaacatcaaattgatcaatgGAATTATCAATTTAACTCATATTTATTGGCTGACAATCTTACTAATACTGTGTATTCATTTGGTTTAACATTCAACCAAATATAATTATACAGCCTTATTTCAAATGTTTGTGGAAGGTTTGCTGTGTAACGTTTTGAAAACTTGTCAATGTTGAATCAAAtgcatttttttcttttttttttctgacAAATGGATCttttcaaaaatgtttatttttgtcctCTGCCCCAAACATACAAACCATTTAGTATATTTCACAGAGCGCAAAATCTGAATGTGTTATTGACAATATGTACAGCTAACGGGAAATGAAAGAAATAAGCGGGTATGGGGTCCAGTAAAAACCTCTACATGAAGCAGTATACTATCTTTTTTTGTTGACAAATACTTAAGACCAAGTTGACTGATAAGCAGAAAAGAAATGGGGCCTACTCTTGAAATAGAATATCTAAGCCAAAGTGGTAAAGGGTGTGACAACCCCTGTTTTTATATCACAGAAGCCCTACTTTGGCTTGTAATTCTGTCTATCCATGGTTTCTCACCATACCACCTCACATATTTACACTGGGGGAAAGAGACACACCCAAAAGTGATTTGTGACATTCTGCATGACTGCACCTTACCGTGTCATGGTCCCTGTAGAATTACACTGACAGCCAACATTGCTAAATGTGACCAACTGAGTTTGAACCGTGTCCTCTGAGCAACAAGACTGTTAgcccgctgagctaaagcctagataATAGTTTGAGGCAAGGGCACTCACAGTTACACTAAGCCATTTTGTGGTTTTATTCAAACAGCCATATTTGCGGATGCCTAACTCAACAACAATCATCTCATTCTGTTTGCAGTGGGGGTCCTCATGCATAGAATCACGTCACCATGGTCAAATTTTAACATGGAGGGGGTGATCCCTGTGGGTCTATGATGACACCCAGATAACTATCACGCACTCCTGTTACTCATACAGTACAACCTGCGGCCATTGTTTCCCATTGGAACAGCAAACTCTGGTGACCATATGGTGGCATTACTGCACTGGTTCAGACCACACTGCAAGCCTGAGAAGAAAATGGCTATGCCTCGGCATgatatttatttttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaattctATATACACAGTGAGAAATTGTTTTGGTTCTCTACTaaagcactttggatttgaaatgactgaggttaaagttcagtcagtcagctttaatttgagggtattttcatccatatcggattaaccatttagaaattacagcactttttgtacatcgTCCAAAAGTATTGGGGCAAATTCACTATTAAAGATTGTGCCCAAAATAAATGGTAAATAGATGTAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2105055 lncRNA downstream 25287 18213772 ~ 18217411 (-) True G1838322
TU2105032 lncRNA downstream 52775 18189566 ~ 18189923 (-) True G1838299
TU2104979 lncRNA downstream 71782 18138721 ~ 18170916 (-) True G1838254
TU2104920 lncRNA downstream 236421 18006056 ~ 18006277 (-) True G1838202
TU2104917 lncRNA downstream 240614 18001723 ~ 18002084 (-) True G1838199
TU2105092 lncRNA upstream 55165 18311011 ~ 18327290 (-) True LOC110502380
TU2105126 lncRNA upstream 118090 18373936 ~ 18374958 (-) True LOC110502384
TU2105157 lncRNA upstream 210650 18466496 ~ 18483789 (-) True G1838416
TU2105280 lncRNA upstream 362453 18618299 ~ 18619145 (-) True G1838521
TU2105398 lncRNA upstream 548231 18804077 ~ 18805565 (-) True G1838628
XM_021580346.2 mRNA downstream 90853 18147539 ~ 18151845 (-) True LOC110502376
XM_036959927.1 mRNA downstream 114836 18083941 ~ 18127862 (-) False LOC110502375
XM_036959928.1 mRNA downstream 114836 18083941 ~ 18127862 (-) True LOC110502375
XM_036959930.1 mRNA downstream 114840 18083941 ~ 18127858 (-) False LOC110502375
XM_036959929.1 mRNA downstream 114841 18083941 ~ 18127857 (-) False LOC110502375
XM_021580361.2 mRNA upstream 55060 18310906 ~ 18327319 (-) False LOC110502380
XM_036959996.1 mRNA upstream 61025 18316871 ~ 18327329 (-) False LOC110502380
XM_036959689.1 mRNA upstream 118082 18373928 ~ 18431103 (-) False LOC110502384
XM_021580364.2 mRNA upstream 118082 18373928 ~ 18434140 (-) False LOC110502384
XM_036959688.1 mRNA upstream 118082 18373928 ~ 18434140 (-) False LOC110502384
TU2104675 other downstream 512186 17725263 ~ 17730512 (-) False LOC110502361
TU2104686 other downstream 523494 17709772 ~ 17719204 (-) True G1837980
TU2104595 other downstream 817378 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other downstream 818299 17423475 ~ 17424399 (-) True LOC110502353
TU2101534 other downstream 2494963 15745638 ~ 15747735 (-) True G1835092
TU2105357 other upstream 593851 18849697 ~ 18854172 (-) True LOC110502394
TU2105797 other upstream 856196 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2106048 other upstream 1029550 19285396 ~ 19297744 (-) False LOC110502408
TU2106041 other upstream 1122726 19378572 ~ 19385042 (-) True LOC110502408
TU2108760 other upstream 2687461 20943307 ~ 20943615 (-) True G1841694

Expression Profile