RNA id: TCONS_00051853


Basic Information

Item Value
RNA id TCONS_00051853
length 3894
RNA type mRNA
GC content 0.48
exon number 24
gene id XLOC_026616
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36904039 ~ 36944749 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCGTTGTCATTAAATGTATtcctttttcctttcttttcagGGCCGTGTTTAGATCCTCTGATCTCTCCTCTCTATGCCTCATCTTTCCACGCTTCCTCCAGATATAACTTTTTTTACTCTGCACACTTTGCCAAACTCTACGGGAGCAGTGGCTGGTCTCCGTCTACTCGGGACAGGCAGCCATGGATGCAGATTGACTTGGGGAGGAAGTATCGTATTATGGCCATTGCTACTCAGGGTACCTTCAACTCTTATGACTGGGTCACCAAATACATGGTGCTGTACGGTGACCGCTTTGACTCATGGACTCCATACGTCATGAAAGGAGGCAACATGACGTTGCCTGGCAACTGGAATTACTACCAGGTGAAGAGGAACGTTTTTCATTATGCGTTCACTGCCAAACATCTGCGCATCTATCCCATGGGCTGGAATACTGAGAACGGGGGCAAGATCGGCCTTCGTGTTGAGTTCTACGGCTGTCCTTACGGTAAACGGCACTCATATGTGATGAACTTTGAGGGGGATGATATGGTTGCATACTCGTTCCCGCGGGGCAGAATGAGGACACTCCAGGACCACTATGCTCTGAACTTTAAGACACTGGAGAAGGACGGTATTTTACTGCACAGTGAAGGTTTGCAGGGAGACTCCATCACTCTAGAGCTGAAGACTGGACGTCTCTACTTACATATCAGCCTGGGGAGCAGTACAGTCCACAACACCAATGGAATGACCACAATGATGCTAGGAAACCTGCTGGACACCCAGCATTGGCACTATGTCACTATCAAACGGTTTGGAAGAGAGCTGAACTTCACCCTGGACAGCCAGACTGAGACCACTATCCTCAATGGAGAGTTCCAGCACCTTGACTTGGACAAAAAGaTTTATGTTGGTGGTGTGATTGAGAAAGACATGCCACACCTGCCCGGTAAGGTCAACTTCCGTGGCTGCATGGAGAACGTCTTCATCAATGGAATCAACATCATCTACATGACACAGAACCAGGAGCCTGAAATTCGACTAAAAAAGATGCACTACATGTGCCGTGATCTCCTCTGGAAACCCATGACCTTTGCAGGACCCAATAACTATCTACAGCTTCCTGGGTTTTTCCGGAAGAACCGTCTGGCGGTAAAGTTCAAGTTTCGCTCTTGGGACTACACAGGGTTACTGATGTTCACCAGGTTTGCAGATGAACTGGGCTCTCTGGAGTTGGGCCTCAGTGAAGGGCAGGTCAACGTCACTCTTATGCAGCCTGGAAACAAAAGATTACGCTTCGCTGCAGGGTACCGTCTCAATGATGGCTTCTGGCACACAGTGGACCTGACTGCCAAAGACAACTTACTGACTATCACTATAGACGAAGATGAGAGCTCACCGCTAAAGATCACTAACCCCTTCATGGTCCGTACAGGAGATCGCTACTTCTTTGGGGGTTGTCCTAAAACCAATAACACGGCTCGCTGTGTGACCAAGCTGTCTCGCTTCCACGGCTGCATGCAGCAGATCTTCATAGACGATGAGCCGGTGGATATAGATGTCATGCTGCAGAGGAAATGGGGCAGATATGCAGAAATCCTGCTGGGCACCTGCGGGATCACTGATAGACATGCTTTATTAAAGTGTCGtccaaacccatgtgaacatgaaGGCAGGTGTATTCAGTCCTGGAATGACTTCTTGTGTGTGTGCAACAACACAGGCTACAAGGGGGAAGTCTGTCATAACTCCGTTTACAGGGAGTCATGTGAGGCCTACAGACTCAATGGAAAATATTGGTCAGGCAACTACACCATAGACCCAGATCTGAGCGGACCACTGAAGCCTTTCACCGTCTACTGCAATATGTTGCAAAAAACATGGACTGTCATCGAGCACAACCGCATGAAAAGCACCAAGGTGAGCGGGTCCACTATAGATCGACCGTATATAGGAGATGTCCAGTATGTAAATGCATCATGGGATGAAGTCACAGCACTAGCGAACACCTCTTTATATTGCGAACAATGGATTGAGTTCTCATGCTACAAATCACGCCTCCTCAACACTCCACATGGAAGGCCTTACACATACTGGATTGGCCGACATAATGAGAGTCATGAGTATTGGGGAGGAGCTTTCCCTGAAAGTGGAAAATGTGGCTGTGCTGTCAATCAAACTTGCACCGACTCAAAGTACTGGTGCAACTGTGATGCCGACTACCGTCAATGGCATTCAGATAAGGGCTACCTGTCATTCCGGGACCATCTGCCTATCAGGCGCCTTGTCATAGGGGACACTAACCGCACCGGTTCAGAAGCACAATACAGTGTTGGAGCACTGTACTGCCATGGAGACAGGAGTATCTGGAACACAATTGCTTTCACCAAGCCCACCTATCTGACATTCCCCACCTTCAAGCCTGGCACTAGCGCTGACATCACATTCCACTTCAGGACCTACCGAACCTATGGTGTGTTTGTGGAGGCCTCAGACGACCACCTTCGAAATTTCTTACGAGTAGAACTCAACTCTACAACTGAGGTGGTGTTTATATTCATGGTGGGGGACGGGATCAGAAACGTGACCCTGCGCTCTCCAAAAGCTCTCAATGATAATGAATGGCATTATGTAGAAGCTGAAATCAATGTGAAACTAGCTCGTCTTAAAGTCGATTTCTTGCCTCCTGCCATTCACAAGTTCCCAGGCCAGACTTACATCACTATGGATTTCACACAACCACTGCTCGTAGGTGCCGCCAATCACACCTTAAGGCCTTTTCTCGGGTGTCTGCGTGGGCTGAGGATGAACGGGGTGCCTGTGGATTTGGAGGGAAAGGTTGACGAGAGCGCTGGGATACGGAGGAACTGCACCGGAGCGTGTCTGAATGCCTCCATACCATGTCGAAATGGAGGCCAATGCATTGATGGCTATGCTTCATACGCCTGTGACTGCAATAACACCGGCTTTGATGGCTATTACTGTCATTTAGATATTGGCGCGTTCTTTGATGTGGGAGCGTGGCTGCGGTATGACGTCCGAAAAGAGCCTATTTCCTTTGACGCGTGGTGGGCCAACTTTTGGATAGAGCCTCACTGGCACAACTTCACTCTGGATGACATAGAGTTCAGCTTCAGTACTCTACAGGCTCCAGCTGTGCTGCTGTATATCAGCTCCTTCAGCAATGATTACATCGCTGTCCTGCTCAAGAAAGATGGCACTCTATCGATGAGATACCGACTCGGGATTATAAGCTACAAATTTAAGATGACTGACAGAAATATGGCAGACGGTTTTCCTCATTTTGTCAACATCACCAGACACAACTATACTGTATGGACGCAGGTGGATTACATGGATCCCTGGATTGAGAAGTTAGTACCAGGAGAGATTCCCAGATTTGACTCTCCAAAGTCTATATTTCTTGGAAGAGTCATGGAGGTGGGAGGTGTGGACTATGAAATTCAAAGACACAACAGTCCAGGTTTTATGGGCTGTATATCAGGGGTCCGCTATAATATCTTCGCCCCACTGAAGGCCTACTTCAGACCCAATGTGACCAATCCACCGGTGACGACTCAGGGTTATGTGGTGGAGTCCAATTGTGGGGCGTTTCCTCCTGTTTTAGGATATGTCCCATGGGAGGACGACCCCTGGTTCACTGGCCTGTGTAAGACTACATATCCTAACATCAACACAGATAAATTAATCGTGACTGTGTCTCTGATGCTGCTCTTCCTGATCCTGTACGGCCTCTACATTTACCTGTACAGGTATAAAGGCAGTTATCATACCAATGAACCCAAGCAGCTGGAGTCTCCCAGCTCGGCTCGACCGCTCACTGACACTCTGCGCAAGGACAGAAAGAACCTGCCTGAAATACAGGAGGAAAGTCCCAATGAATAA

Function

GO:

id name namespace
GO:0030913 paranodal junction assembly biological_process
GO:0033270 paranode region of axon cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030916-2 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within paranodal junction assembly. Predicted to be located in membrane; paranodal junction; and paranode region of axon. Predicted to be integral component of membrane. Is expressed in posterior lateral line nerve. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome. Orthologous to human CNTNAP1 (contactin associated protein 1).

Ensembl:

ensembl_id ENSDART00000111981

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052478 lncRNA downstream 293015 36610334 ~ 36611024 (-) True XLOC_026609
TCONS_00053071 lncRNA downstream 316903 36583100 ~ 36587136 (-) True XLOC_026606
TCONS_00051832 lncRNA downstream 446731 36451635 ~ 36457308 (-) True XLOC_026604
TCONS_00051828 lncRNA downstream 463352 36439500 ~ 36440687 (-) True XLOC_026603
TCONS_00051827 lncRNA downstream 465688 36430945 ~ 36438351 (-) False XLOC_026603
TCONS_00053072 lncRNA upstream 21110 36953625 ~ 36954088 (-) True XLOC_026617
TCONS_00053073 lncRNA upstream 36888 36969403 ~ 36972222 (-) True XLOC_026619
TCONS_00051861 lncRNA upstream 203903 37136418 ~ 37143881 (-) True XLOC_026622
TCONS_00053074 lncRNA upstream 649007 37581522 ~ 37584807 (-) True XLOC_026625
TCONS_00053075 lncRNA upstream 701585 37634100 ~ 37649261 (-) False XLOC_026626
TCONS_00051851 mRNA downstream 57543 36836711 ~ 36846496 (-) False XLOC_026615
TCONS_00051852 mRNA downstream 64924 36836719 ~ 36839115 (-) True XLOC_026615
TCONS_00051848 mRNA downstream 79849 36807642 ~ 36824190 (-) False XLOC_026614
TCONS_00051850 mRNA downstream 80365 36807890 ~ 36823674 (-) True XLOC_026614
TCONS_00051849 mRNA downstream 80396 36807890 ~ 36823643 (-) False XLOC_026614
TCONS_00051857 mRNA upstream 127288 37059803 ~ 37082618 (-) False XLOC_026620
TCONS_00051858 mRNA upstream 132386 37064901 ~ 37082618 (-) True XLOC_026620
TCONS_00051860 mRNA upstream 203001 37135516 ~ 37148594 (-) False XLOC_026622
TCONS_00051862 mRNA upstream 303409 37235924 ~ 37476475 (-) False XLOC_026623
TCONS_00051863 mRNA upstream 307452 37239967 ~ 37351225 (-) False XLOC_026623
TCONS_00051846 other downstream 147890 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051819 other downstream 657244 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051818 other downstream 657317 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051816 other downstream 664998 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051795 other downstream 1956005 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051856 other upstream 35356 36967871 ~ 36967993 (-) True XLOC_026618
TCONS_00051859 other upstream 143183 37075698 ~ 37075813 (-) True XLOC_026621
TCONS_00051873 other upstream 741133 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051881 other upstream 834770 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051892 other upstream 1980863 38913378 ~ 38918717 (-) False XLOC_026635

Expression Profile

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