RNA id: TU2105092


Basic Information

Item Value
RNA id TU2105092
length 2229
lncRNA type sense_over
GC content 0.49
exon number 5
gene id LOC110502380
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18310906 ~ 18327329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCcagcccctctctcgctctctgtctctctctctctcgctctctctctcataagaGCAGCGCATGCACATACACTCGCGCACACACCCACCTACCACGCAGAGACACAACCTCAGgcgcgctcacacacacgcagacacacacgcaggcacagaAGGGCACACTGAGCAACCTCATCTACCAGCTCCAAGACACAGCCAGAGCCAGCTAAAAGACACAGCCCTGTAACAGCAGACCAGCATGGATTACCTGAAGAAGGGATTCTCCATGGCCAAGGAAGGTGCGGTGGCTGCAGCGGAGAAGACCAAGGCAGGGGTGGAGGGGGCAGCTGCCAAAACCAAGGAGGGGGTAATGTATGTGGggaacaagacaaaggaCGGAATGGTAGCAGGTGTGAACACAGTGGCCCAGAGAACAACTGACCAAGCCAATATTGTCGGGGACGCAACGGTCGCCGGAGCCAATGAGCTGTCTCAGCAAACAGTGGAAGGGATGGAGAACGCAGCGGTGAACTCCGgattggtgaaccagAGTGACTTCTCTCAGGGAGCTGAGCAGGCAGGACAGTAgGAGTGTTGGTTCTGACATCAGTGATCTGCAGCAGCCTCCCTCGTCCTCTCTTCCGGAAGAAATGCCGTGTTAGATGCTGCTCGTCCTGCGTCTCCCATTGCCAACTCTTGTTTCTGGGGAGGGCTACCAACCCCggtgtgcccccccccctctgatGCTTTCTTTGTGTGACTCGATGGAAACGAAACATTCTGAAAGATCCTCCCCGTCCACAACATCCCTCACCATACAAGCTACACATTCCTGCCCCGTATACCTTTACCGTCCATATCCCTCACCCCTGACTATTACCCACCTTACcactgtgacccccccccccccattcccttTGCCCACCACTCCAGGTCATCCTACACGataccacacatacacatacacaaacatacagttcacacatgcatacacaccagGACATTGAGAAAGCCTTCGCAGAACAATACTTTTAGTCCTCTCCGAGAGGGTTGGCAATGTGAGACTTCCTGGTAGTGTGCACTCTGTCAGATAATGTAACACCAGTACTTATACAGTAGATGTACTCATGTCAGTGTATGCGTTGGTCAGGTTTGTTGATGAAGATGTGTTTTGAAGTGAGTTAATTTAACCCTGTGTGTCTTAATGCCTGACGCCCCCTCATCCTTATTGTGACAGAACAGAGGGTGACACTTTATTTAGATAGCCCGGATTTTCCATCTGTAGACGCTCTACAGATGGCCATGCGATCAGCAAACTATCTTGCTAAGGTTactgctagggttaggtttagaatatgggttagggttagtagatagttagttgaaatgttactgatagtctatAGATGGTCCATCTGTCGATACTCTacagactatccaaataaagtgttgccAAACAGGGTTCAGGGTCAGAGTGAAGGTGAAGTTATGGATTAACAGCTCCCCCATCACATGACCCAGGCCGTCTCGCACCTGCAGTGGGGCTGCAGTACAGACAGGCTACTCTGTATCTCATAAACAGATACTGTCGGTGGTGTTTCCTGCTGTCTCTCTGCCCCGAACCCTGGGTCTGCTATATAGAGAAATCAAAGAGAGAAAGGTGACGTTAGGAGTTTCCAACGGCCTTTATCTTGTGTTTGACTAGTTGCAATGAAAGGCaatgaaaaaaatgaaatgtaTGTATGTGATCAGATTAAAGATATAGTATAATGGTCCCACTTCCAGATTCAGTATGTATGTGATCAGACTAAAGATATAGTATAATGGTCCCACTTCCAGATTCAGTATGTAGGCCTACCTCAGACGTGAATACGAGTAGTCGACAGGTCAAATACCTTGACATCCCGTACATCTGGTCTTCGAGGAAAACAATTTCTCCACCCCCCTCATCATGCTTTCACTCTGATCCTTCATTCAAGCGACGCCTACAGGTCACTCAACAGTGTACCCTGccccctcccctgtctgtctgctttcgGTGACTTGAACAGGTCTTTTAAACCATCACGGTGTTTGTCCTTTGAAGCCGTCTCAAACGAGACTGCGTGTTGCCTTACTAACATCCAGACACATAGACTCAGACACACATTCATTGGGACTAAAAACACAACCTCAGACAAATTCAAATTCACCTATTGCACGCACGTATCCAAGAATTAGAGGttacatacacactgacacacacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2105055 lncRNA downstream 93600 18213772 ~ 18217411 (-) True G1838322
TU2105032 lncRNA downstream 121088 18189566 ~ 18189923 (-) True G1838299
TU2104979 lncRNA downstream 140095 18138721 ~ 18170916 (-) True G1838254
TU2104920 lncRNA downstream 304734 18006056 ~ 18006277 (-) True G1838202
TU2104917 lncRNA downstream 308927 18001723 ~ 18002084 (-) True G1838199
TU2105126 lncRNA upstream 46646 18373936 ~ 18374958 (-) True LOC110502384
TU2105157 lncRNA upstream 139206 18466496 ~ 18483789 (-) True G1838416
TU2105280 lncRNA upstream 291009 18618299 ~ 18619145 (-) True G1838521
TU2105398 lncRNA upstream 476787 18804077 ~ 18805565 (-) True G1838628
TU2105481 lncRNA upstream 613997 18941287 ~ 18941544 (-) True G1838709
XM_021580351.2 mRNA downstream 55161 18242698 ~ 18255850 (-) True LOC110502378
XM_021580349.2 mRNA downstream 55163 18242698 ~ 18255848 (-) False LOC110502378
XM_021580353.2 mRNA downstream 55163 18242698 ~ 18255848 (-) False LOC110502378
XM_021580352.2 mRNA downstream 55164 18242698 ~ 18255847 (-) False LOC110502378
XM_021580354.2 mRNA downstream 55165 18242698 ~ 18255846 (-) False LOC110502378
XM_036959689.1 mRNA upstream 46638 18373928 ~ 18431103 (-) False LOC110502384
XM_021580364.2 mRNA upstream 46638 18373928 ~ 18434140 (-) False LOC110502384
XM_036959688.1 mRNA upstream 46638 18373928 ~ 18434140 (-) False LOC110502384
XM_036959690.1 mRNA upstream 46638 18373928 ~ 18434140 (-) False LOC110502384
XM_036960847.1 mRNA upstream 107262 18434552 ~ 18502963 (-) True LOC110503086
TU2104675 other downstream 580499 17725263 ~ 17730512 (-) False LOC110502361
TU2104686 other downstream 591807 17709772 ~ 17719204 (-) True G1837980
TU2104595 other downstream 885691 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other downstream 886612 17423475 ~ 17424399 (-) True LOC110502353
TU2101534 other downstream 2563276 15745638 ~ 15747735 (-) True G1835092
TU2105357 other upstream 522407 18849697 ~ 18854172 (-) True LOC110502394
TU2105797 other upstream 784752 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2106048 other upstream 958106 19285396 ~ 19297744 (-) False LOC110502408
TU2106041 other upstream 1051282 19378572 ~ 19385042 (-) True LOC110502408
TU2108760 other upstream 2616017 20943307 ~ 20943615 (-) True G1841694

Expression Profile