RNA id: XM_021580364.2


Basic Information

Item Value
RNA id XM_021580364.2
length 4479
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110502384
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18373928 ~ 18434140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAACTCGGTCCCCATCAAATGGTTGTGCATTCGCTGCAGTGATTGGAAAATGTTGGTCTGTCTACGTGTGTTTCATCAAATGACATAGGCAGAGGCAAAAAACAGAGCGAGTAGAGCAGGGCCGACGTTAAACTGCATGTTTGGGAAATGTACACCACATTTTTGCAACTTCAAGACGAAATAGAAAGATACAGAGGAGTACTCGCCCGGAACCAAAAGGATTGCCACATCTGCTGAAGAAAAAGGTCTCCATGGTGCCATGCTGGATTTCTATCTCCAGCGTCTATGTTCTTTATCCCTATGGATCTGTATGACCCCCAGCACCAACACTGGTCTCTACAAGCATCCTCAACATGCTCCTGCACCATGGATCCCCCAGTGAGGGTTTTGGACCGAGGGAGCTTGTGAGAAAGAAGatttgaattttttttatttgccaTCTTACCcatcctccctcactccctcctctctccctgccccataCATATTCACCCGTACCTCCACTCCCCCCTAACGGGGGAAAACTACTCTGCACCTCTTCGACCTGTGCTGAACCAGGAAGGGACAGGACTAGGCCCACCATCAGCCTACAGAGGTGACCAACAAGCTCCCACAGAGAGCAGTCCAGCCCAGTCTCCACAAGTCACTGTGCCAGGATGACAGGGTTGCCCTCTTGCATTTCCACGGTGGGATTCTGCATCCTACTGGTGATCAGAGCTGAAGCTGGTCAGAATCCAGACCACATGCTCCATGGCACCGGGCACAAGCATGAGTCCAGGAAGCCCGGAGACGGGCCCACGGTGGCCCCAGAGGACGCCGCCCGCTTTCTGAGCTGCTACTGCTCGGGCCACTGTCCAGAGGACCACAAAAATAACACCTGCGAGACGAATGGCCAGTGTTTTGCCATCATCGAGGAGGACGAGAATGGAGAAGCTATTCTGACCTCTGGCTGCATGAAGTATGAAGGCTCACATTTTCAATGCAAGGATTCACCCAGGGCTCAGACAAGGCGAACGATCGAATGCTGCGATACAGACTTCTGTAATCGGGACCTGCAGCCCACATTACCTCCCCCAATGGACACTGGTACCTACTTTGGCAGTGCCCATTGGCTGGCTTTCCTTATATCAATGACTGTGTGCTGCTGCACTCTCATCTGCATCACGGTAGTCTGTTACTACAGGTACAAgtggcagacagagaggcagCGGTACCACCGGGACCTGGAGCAGGACGAGGCCTTCATCCCTGTGGGAGAGTCTCTCAAAGAACTCATTAACCAGTCCCAGTCCTCTAGCAGTGGCTCTGGGCTCCCCCTGCTGGTGCAGCGTACCATTGCCAAGCAGATCCAGATGGTACGCCAGATCGGCAAGGGGCGGTACGGCGAGGTGTGGCTGGGCCGCTGGCGGGGAGAGAAGGTGGCCGTCAAGGTGTTCTTCACCCGGGAGGAGGCCAGCTGGTTCAGAGAGACTGAGATTTACCAAACTGTCCTCATGAGGCACGAGAACATACTGGGGTTCATAGCAGCAGACATCAAGGGTACCGGGGCCTTCACGCAGCTCCTCCTCATCACAGACTACCATGAGAACGGCTCCCTGTACGACTACCTGAAGTTCACCACGCTGGACACCCAGAGCCTGCTGCGACTGGCCTACTCCGCTGCCTGTgccctgtgccacctccacacggAGATCTACGGCACCCAGGGCAAGCCGGCCATCGCCCACCGAGACCTCAAGAGCAAGAACATCCTGATGAAGAAAAATGGAACCTGCTGCATCGCTGACCTGGGTCTGGCTGTCAAGTTCAACAGTGATACCAACGAGGTGGACGTTCCTCTGAGTACGCGGGTGGGGACCCGGAGGTACATGGCCCCTGAGGTGTTGGGCGAGACCCTGAACAAGAACCACTTCCAGGCCTACATCATGGCTGATATATACAGCTACAGCCTCATCATCTGGGAGATGGCCCGCCGCTGTGTAACAGGAGgcaTAGTGGAGGACCACCAGCTGCCCTACTATGAGATGGTGCCGGCAGAGCCGTCCTTTGAGGACATGctggaggtggtgtgtgtgaaaGGGCTGCGGCCCACCGTGTCCAACAGGTGGAACGGTGACGAGtgTCTGAGAGCCATGCTGAAGCTGATGTCTGAGTGCTGGGCCCACAACCCCGCCTCGCGCCTCACCATCTTACGAGTCAAGAAGACCTTGGCCAAAATGGTAGAATCGCAGGACATCAAGATTTGATCCTTTTCCCCCCTACATACTCAACACAGCCTGACCTAGAGACAGAACTCCCCAGTGTGTCCTAATGCTGAATGTGTCACCTCTGTTCAGTTGGcaggggaggaggaacagggtaTGGGAGAAAAAGGACCCTGTTGTCACTGGGCCTTGGGCATAGAGAGTTAACCTCCATGAGTCTCTATCACCACAACGGACAGATGCTGCTGCCAGAGGCTCTTTCCCTTATTCCCTCCCTGGCCAGAGGAGTTCTTGGTTAACGTGCTGCATTGAATGCTTTCTGTGAAAGTCAAAACATGACAttgtgtgtggagggggatgGCATTTTCCTGCTCACATGTTGATGGGCAGAAAGGAATATGATGGAGGAACCTTAGAGCCTCACTTCAAACCAAGACACTGCCCTCGCAAGCGTCACCACCTGCCAATTATGTTCGATTTTTGCCTGTGAGCTTTTTATGCCAACATTTTTTTCTCTTCAGGACAGTCTTCTCCTGCCATATTAAAATGTCTCTCGACTCATAAGTAGAGTAATTACGAAATAAGGTACTATAATTATATGTGAATTTAATATGTAAATATATTGTATCGATAGATGCCGTGCCTCAACAAAAAACAATACATGCTGCAATGGTATTCACGTCCAGTGGGCTTCAAACGCCACCTGCTTCAAGAGCTATGAGCAATCCAGTCAACCAAGGACGTTGTAAGAGGGGATACCTGACTTGCCTTAAATCAACTTGTCACTGTGCTTCCTACAACAAACCTCAACTTAGTAACTTGTCAAAAAAAGACgtctggttaaaaaaaaaacatatttaacgCAAAATTGTATTCAAAGGACATTTGTGAATAGGGAGTTTGTGTCCCATCATGTCTCTATGCTTACCTCTTCTTCGTATGTGTTATATTCTGTATGTCTTCTGGGAGGAAAGTTCAGAACACAAAAATGGCATATTTTGGCCCTCATGAAGCCAATGCAAAAGTGTGCAGCTTAGAGGGCACACATCAATTAGGCCTTTCTAAAAATGATTAATCTGACATTTCTGCTGTCCCGACGCCCCACTGATTCTTGCCCACATTCATAGATCTAAgatgaatccccccccccccctgctcttcTCTTGCTTTTCATTCTATTTTGAgttacagatatatatatatattcattaagTGGCCAACTTTCATATTGCCAAACATCATGTGAGCTCAGCCGTTGAACTGTACCATTGTGCAGTAATAGTTTGTCTTCCGGGGTCCTACATGTCAGGTTTGTCATAGGGCTCACAAGTCAACATTAGTTCAGAAAATATGCAATATTTTACTAACTTAATGTGCAATTATATAGCTTACTCAATGCTATGGTAAATGGCATATTTACTTGTGCTAAAAACATTTAGTTAGCCAGAGCTTTAATGCCATTGACGTTTTTTGATCCATCAAGCTTCCTCGGGTGACAGAATTGCAGTCAAGTACAGAGGGAACATACAGTAGATGCAACACTGAAGTGAAACCACTTCCGCTTGCTTTGGGACGCATGCAAAtatatatttgcatatttcctCAGTGATGTTATCTGCGGGCCAGTGCAGAGGGTAGAGCAAGCCCATTTATGACCATTTAGCACAAGAGGAACTGCATTTCTACATTTAGAACTTCATACAGGTATGAAATGAAAACAACATAAATAATATCCTTGGCTGAAGCACTTGTCTTCAACTCTAGATGCAGATCGTGCCCTTTGTTAACCCTCTTGCATAGGATCCAAGTCTTGGCCAGTGTATTCTTAACTTTTTCTTCCAAGTCCCTGCTCCTTTTGTGTCTGCCTCTTTATCTATCCAATGTTTGCTTTTGCTTCCCTTGTGTCCATACAAATTCTGAAAAAAATATCTTGCAGTGCTTGTGGGTTTGCGCACATGTTTAAGTGTGCATGTTCGCTGAAATCACGTGCAACCTAGTGTCAGGACAGTTTCTTTGTGAATTAAGCTAACAGTACATATGGTAGATATTTAAGAAATATTTCACCTGAGCAGTAACTAGTGTTTTCCTCTTTGTAATATGCAAGAAAACCATATAGAATAATCTCTATGTACATCTTTAATGTGTTTTTATACAGCATCTGGTTAAAAGGTGCCTTTTTTTGAGTTTACCAAGGAAAGAAAGCGATTCTGTTTCTGTACACAGCCTGTCCAATGTATCAATTTGAAAGTAAATAACCTTATTTTAGTACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2105092 lncRNA downstream 46638 18311011 ~ 18327290 (-) True LOC110502380
TU2105055 lncRNA downstream 156517 18213772 ~ 18217411 (-) True G1838322
TU2105032 lncRNA downstream 184005 18189566 ~ 18189923 (-) True G1838299
TU2104979 lncRNA downstream 203012 18138721 ~ 18170916 (-) True G1838254
TU2104920 lncRNA downstream 367651 18006056 ~ 18006277 (-) True G1838202
TU2105157 lncRNA upstream 32356 18466496 ~ 18483789 (-) True G1838416
TU2105280 lncRNA upstream 184159 18618299 ~ 18619145 (-) True G1838521
TU2105398 lncRNA upstream 369937 18804077 ~ 18805565 (-) True G1838628
TU2105481 lncRNA upstream 507147 18941287 ~ 18941544 (-) True G1838709
TU2105483 lncRNA upstream 508141 18942281 ~ 18943024 (-) True G1838711
XM_036959996.1 mRNA downstream 46599 18316871 ~ 18327329 (-) False LOC110502380
XM_021580361.2 mRNA downstream 46609 18310906 ~ 18327319 (-) False LOC110502380
XM_021580351.2 mRNA downstream 118078 18242698 ~ 18255850 (-) True LOC110502378
XM_021580349.2 mRNA downstream 118080 18242698 ~ 18255848 (-) False LOC110502378
XM_036960847.1 mRNA upstream 412 18434552 ~ 18502963 (-) True LOC110503086
XM_021580372.2 mRNA upstream 93226 18527366 ~ 18601530 (-) True LOC110502386
XM_036959699.1 mRNA upstream 190169 18624309 ~ 18651217 (-) False LOC110502387
XM_036959698.1 mRNA upstream 190169 18624309 ~ 18655710 (-) False LOC110502387
XM_036959693.1 mRNA upstream 190169 18624309 ~ 18699092 (-) False LOC110502387
TU2104675 other downstream 643416 17725263 ~ 17730512 (-) False LOC110502361
TU2104686 other downstream 654724 17709772 ~ 17719204 (-) True G1837980
TU2104595 other downstream 948608 17423475 ~ 17425320 (-) False LOC110502353
TU2104596 other downstream 949529 17423475 ~ 17424399 (-) True LOC110502353
TU2101534 other downstream 2626193 15745638 ~ 15747735 (-) True G1835092
TU2105357 other upstream 415557 18849697 ~ 18854172 (-) True LOC110502394
TU2105797 other upstream 677902 19112042 ~ 19121343 (-) True si:dkey-51a16.9
TU2106048 other upstream 851256 19285396 ~ 19297744 (-) False LOC110502408
TU2106041 other upstream 944432 19378572 ~ 19385042 (-) True LOC110502408
TU2108760 other upstream 2509167 20943307 ~ 20943615 (-) True G1841694

Expression Profile